An R package for the easy provision of simple but complete tab-delimited genomic annotation from a variety of sources and organisms

Documentation for package ‘sitadela’ version 1.0.0

addAnnotation	Build a local genomic regions annotation database
addCustomAnnotation	Import custom annotation to existing or new sitadela annotation database from GTF file
getAnnotation	Annotation downloader
getDbPath	Get and set sitadela default database path
getInstalledAnnotations	List installed sitadela annotations
getSeqInfo	Retrieve sequence length and other information
getUserAnnotations	List installed custom user-defined sitadela annotations
importCustomAnnotation	Import a metaseqR2 custom annotation element
loadAnnotation	Load a sitadela simple annotation element
removeAnnotation	Remove an annotation from a sitadela database
setDbPath	Get and set sitadela default database path
testCustomBuild	Query and database build testing functions
testCustomGtf	Query and database build testing functions
testEnsembl	Query and database build testing functions
testEnsemblSimple	Query and database build testing functions
testKnownBuild	Query and database build testing functions
testUcsc	Query and database build testing functions
testUcscAll	Query and database build testing functions
testUcscUtr	Query and database build testing functions
testUcscUtrAll	Query and database build testing functions