PharmacOGenomics Ontology Support

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Documentation for package ‘pogos’ version 1.12.0

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basicDecoder convert binary output of GET()$content to list
CCLE_drts compounds_v1: serialization of compounds info from PharmacoDb v1
cell_lines_v1 compounds_v1: serialization of compounds info from PharmacoDb v1
compoundsByCell initial version of compound browser over pharmacoDb cells
compounds_v1 compounds_v1: serialization of compounds info from PharmacoDb v1
datasets_v1 compounds_v1: serialization of compounds info from PharmacoDb v1
DRProfile-class DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
DRProfSet DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
DRProfSet-class DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
DRTraceSet DRTraceSet class manages dose-response information for a single cell line, multiple drugs
DRTraceSet-class DRTraceSet class manages dose-response information for a single cell line, multiple drugs
getDrugs DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
getDrugs-method DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
iriCCLE obtain an example trace set stored locally, for irinotecan and selected cell lines
plot-method DRProfSet is a class for managing dose-response information about cell lines from a pharmacogenomics dataset
plot-method DRTraceSet class manages dose-response information for a single cell line, multiple drugs
rxdbQuery_v1 very simple query formulation, build queries using endpoints of bhklab PharmacoDB API
tissues_v1 compounds_v1: serialization of compounds info from PharmacoDb v1
topEndpoints_v1 enumerate top level endpoint terms for bhklab PharmacoDB API
traces trace extractor
[-method subscripting on DRProfSet extracts a profile for a single drug whose name constitutes the index