R/findPathwaysByLiterature.R
findPathwayNamesByLiterature.Rd
Retrieve list of pathway names containing the query citation.
findPathwayNamesByLiterature(query)
query | The |
---|
A list
of lists
Note: there will be multiple listings of the same pathway name if copies exist for multiple species.
{ findPathwayNamesByLiterature('19649250') findPathwayNamesByLiterature('smith') findPathwayNamesByLiterature('cancer') }#> [1] "E3 ubiquitin ligases ubiquitinate target proteins" #> [2] "Signaling by FGFR1" #> [3] "Irinotecan Pathway" #> [4] "Irinotecan Pathway" #> [5] "Irinotecan Pathway" #> [6] "Irinotecan Pathway" #> [7] "Irinotecan Pathway" #> [8] "Irinotecan Pathway" #> [9] "RAF/MAP kinase cascade" #> [10] "Energy dependent regulation of mTOR by LKB1-AMPK" #> [11] "Hedgehog ligand biogenesis" #> [12] "Signaling by FGFR2" #> [13] "mTOR signalling" #> [14] "Metastatic brain tumor" #> [15] "Signaling by Rho GTPases" #> [16] "Signaling by FGFR4" #> [17] "ATM Signaling Pathway" #> [18] "NRF2-ARE regulation" #> [19] "Signaling by FGFR3" #> [20] "DNA IR-Double Strand Breaks (DSBs) and cellular response via ATM" #> [21] "Integrin-mediated Cell Adhesion" #> [22] "Bladder Cancer" #> [23] "ATM Signaling Pathway" #> [24] "TP53 Regulates Metabolic Genes" #> [25] "Overview of leukocyte-intrinsic Hippo pathway functions" #> [26] "Transcriptional activation by NRF2" #> [27] "Keap1-Nrf2" #> [28] "Keap1-Nrf2" #> [29] "Keap1-Nrf2" #> [30] "Retinol metabolism" #> [31] "Phytochemical activity on NRF2 transcriptional activation" #> [32] "Integrin-mediated Cell Adhesion" #> [33] "Keap1-Nrf2" #> [34] "Keap1-Nrf2" #> [35] "Keap1-Nrf2" #> [36] "Metastatic brain tumor" #> [37] "Parkinsons Disease Pathway" #> [38] "Bladder Cancer" #> [39] "DNA IR-damage and cellular response via ATR" #> [40] "Parkinsons Disease Pathway" #> [41] "DNA Damage Response" #> [42] "miRNA Regulation of DNA Damage Response" #> [43] "DNA Damage Response" #> [44] "DNA damage response" #> [45] "HDR through Homologous Recombination (HRR) or Single Strand Annealing (SSA)" #> [46] "YAP1- and WWTR1 (TAZ)-stimulated gene expression" #> [47] "DNA Damage/Telomere Stress Induced Senescence" #> [48] "Signaling by ERBB2" #> [49] "Signaling by PTK6" #> [50] "NCAM signaling for neurite out-growth" #> [51] "Other interleukin signaling" #> [52] "Interleukin-3, Interleukin-5 and GM-CSF signaling" #> [53] "Signaling by SCF-KIT" #> [54] "Signaling by NTRK1 (TRKA)" #> [55] "RNA interference" #> [56] "Signaling by MET" #> [57] "Signaling by VEGF" #> [58] "Signaling by EGFR" #> [59] "Fanconi Anemia Pathway" #> [60] "Generic Transcription Pathway" #> [61] "Phase II - Conjugation of compounds" #> [62] "TCF dependent signaling in response to WNT" #> [63] "Signaling by NTRK3 (TRKC)" #> [64] "Signaling by Type 1 Insulin-like Growth Factor 1 Receptor (IGF1R)" #> [65] "Oxidative Stress Induced Senescence" #> [66] "Senescence-Associated Secretory Phenotype (SASP)" #> [67] "Signaling by NTRK2 (TRKB)" #> [68] "ESR-mediated signaling" #> [69] "PIP3 activates AKT signaling" #> [70] "Signaling by ERBB4" #> [71] "PI Metabolism" #> [72] "Signaling by Hippo" #> [73] "TP53 Regulates Transcription of DNA Repair Genes" #> [74] "Signaling by Leptin" #> [75] "Pre-NOTCH Expression and Processing" #> [76] "Oncogene Induced Senescence" #> [77] "RET signaling" #> [78] "Gastrin-CREB signalling pathway via PKC and MAPK" #> [79] "Signaling by NOTCH3" #> [80] "Interleukin-2 family signaling" #> [81] "Fc epsilon receptor (FCERI) signaling" #> [82] "Transcriptional regulation by RUNX1" #> [83] "Signaling by Insulin receptor" #> [84] "DAP12 interactions" #> [85] "O-linked glycosylation" #> [86] "Transcriptional regulation by RUNX2" #> [87] "Signaling by PDGF" #> [88] "RAB GEFs exchange GTP for GDP on RABs" #> [89] "Aflatoxin B1 metabolism" #> [90] "Aflatoxin B1 metabolism" #> [91] "Regulation of sister chromatid separation at the metaphase-anaphase transition" #> [92] "Type 2 papillary renal cell carcinoma" #> [93] "exRNA mechanism of action and biogenesis" #> [94] "Aflatoxin B1 metabolism" #> [95] "Aflatoxin B1 metabolism" #> [96] "Aflatoxin B1 metabolism" #> [97] "Aflatoxin B1 metabolism" #> [98] "Glycerophospholipid Biosynthetic Pathway" #> [99] "Glycerophospholipid Biosynthetic Pathway" #> [100] "Cancer immunotherapy by PD-1 blockade" #> [101] "Chromosomal and microsatellite instability in colorectal cancer " #> [102] "Epithelial to mesenchymal transition in colorectal cancer" #> [103] "Apoptosis-related network due to altered Notch3 in ovarian cancer" #> [104] "Apoptosis-related network due to altered Notch3 in ovarian cancer" #> [105] "Small cell lung cancer" #> [106] "Mammary gland development pathway - Embryonic development (Stage 1 of 4)" #> [107] "TP53 Regulates Transcription of Cell Cycle Genes" #> [108] "Regulation of TP53 Expression and Degradation" #> [109] "Interleukin-15 signaling" #> [110] "Processing of Capped Intron-Containing Pre-mRNA" #> [111] "Asparagine N-linked glycosylation" #> [112] "TGF Beta Signaling Pathway" #> [113] "DNA methylation" #> [114] "Transforming Growth Factor (TGF) Beta Signaling Pathway" #> [115] "Mitotic G1-G1/S phases" #> [116] "Beta-catenin independent WNT signaling" #> [117] "Abnormal conversion of 2-oxoglutarate to 2-hydroxyglutarate" #> [118] "TGF Beta Signaling Pathway" #> [119] "Protein ubiquitination" #> [120] "Pentose phosphate pathway" #> [121] "p53 pathway" #> [122] "Transforming Growth Factor (TGF) Beta Signaling Pathway" #> [123] "Inositol phosphate metabolism" #> [124] "Regulation of TP53 Activity through Phosphorylation" #> [125] "Nucleotide Excision Repair" #> [126] "Mismatch Repair" #> [127] "TET1,2,3 and TDG demethylate DNA" #> [128] "Caspase activation via Dependence Receptors in the absence of ligand" #> [129] "Transforming Growth Factor (TGF) Beta Signaling Pathway" #> [130] "Transforming Growth Factor (TGF) Beta Signaling Pathway" #> [131] "Ebola Virus Pathway on Host" #> [132] "NADPH regeneration" #> [133] "TGF Beta Signaling Pathway" #> [134] "Integrated Cancer pathway" #> [135] "Regulation of RUNX1 Expression and Activity" #> [136] "Signaling by Erythropoietin" #> [137] "Regulation of Hypoxia-inducible Factor (HIF) by oxygen" #> [138] "RUNX1 and FOXP3 control the development of regulatory T lymphocytes (Tregs)" #> [139] "PluriNetWork" #> [140] "S Phase" #> [141] "Rett syndrome causing genes" #> [142] "Interactions between immune cells and microRNAs in tumor microenvironment" #> [143] "MET in type 1 papillary renal cell carcinoma" #> [144] "Oxysterols derived from cholesterol" #> [145] "Senescence and Autophagy in Cancer" #> [146] "TGF-beta Receptor Signaling" #> [147] "Pathways in clear cell renal cell carcinoma" #> [148] "Integrated Cancer Pathway" #> [149] "Zinc homeostasis" #> [150] "PI3K-Akt Signaling Pathway" #> [151] "Tamoxifen metabolism" #> [152] "Tamoxifen metabolism" #> [153] "Folate Metabolism" #> [154] "Selenium Micronutrient Network" #> [155] "Vitamin B12 Metabolism" #> [156] "Selenium Micronutrient Network" #> [157] "Vitamin B12 Metabolism" #> [158] "Folate Metabolism" #> [159] "Mevalonate pathway" #> [160] "Fragile X Syndrome " #> [161] "Integrated Breast Cancer Pathway" #> [162] "Breast cancer pathway" #> [163] "Endometrial cancer" #> [164] "FABP4 in ovarian cancer" #> [165] "Senescence and Autophagy in Cancer" #> [166] "Deregulation of Rab and Rab Effector Genes in Bladder Cancer" #> [167] "Deregulation of Rab and Rab Effector Genes in Bladder Cancer" #> [168] "Non-small cell lung cancer" #> [169] "Fluoropyrimidine Activity" #> [170] "Fluoropyrimidine Activity" #> [171] "Tamoxifen metabolism" #> [172] "RAC1/PAK1/p38/MMP2 Pathway" #> [173] "ErbB Signaling Pathway" #> [174] "Integrated Breast Cancer Pathway" #> [175] "ErbB Signaling Pathway" #> [176] "TGF-beta Receptor Signaling" #> [177] "Neurodegeneration with brain iron accumulation (NBIA) subtypes pathway" #> [178] "Transport of bile salts and organic acids, metal ions and amine compounds" #> [179] "MicroRNA for Targeting Cancer Growth and Vascularization in Glioblastoma" #> [180] "MFAP5 effect on permeability and motility of endothelial cells via cytoskeleton rearrangement" #> [181] "Modified nucleosides derived from t-RNA as urinary cancer markers" #> [182] "Hereditary leiomyomatosis and renal cell carcinoma pathway" #> [183] "Mitotic G2-G2/M phases" #> [184] "RUNX1 regulates genes involved in megakaryocyte differentiation and platelet function" #> [185] "Integrin alphaIIb beta3 signaling" #> [186] "Sphingolipid metabolism" #> [187] "Transcriptional regulation by RUNX3" #> [188] "Hedgehog 'on' state" #> [189] "Unfolded Protein Response (UPR)" #> [190] "RHO GTPases Activate Formins" #> [191] "Genotoxicity pathway" #> [192] "Sulfur amino acid metabolism" #> [193] "RHO GTPases Activate WASPs and WAVEs" #> [194] "WNT ligand biogenesis and trafficking" #> [195] "SUMOylation of transcription factors" #> [196] "Gap junction trafficking and regulation" #> [197] "Miscellaneous transport and binding events" #> [198] "Signaling by NOTCH4" #> [199] "Nuclear Receptors Meta-Pathway" #> [200] "Visual phototransduction" #> [201] "Chromatin organization" #> [202] "RAF-independent MAPK1/3 activation" #> [203] "Netrin-1 signaling" #> [204] "Abacavir transport and metabolism" #> [205] "Amino acid synthesis and interconversion (transamination)" #> [206] "Iron uptake and transport" #> [207] "Metabolism of polyamines" #> [208] "Activation of anterior HOX genes in hindbrain development during early embryogenesis" #> [209] "Degradation of the extracellular matrix" #> [210] "Nucleobase catabolism" #> [211] "Activated PKN1 stimulates transcription of AR (androgen receptor) regulated genes KLK2 and KLK3" #> [212] "Metabolism of folate and pterines" #> [213] "Neurotransmitter Release Cycle" #> [214] "Signaling by ROBO receptors" #> [215] "Surfactant metabolism" #> [216] "Transcriptional Regulation by MECP2" #> [217] "RHO GTPases activate PKNs" #> [218] "DNA Double Strand Break Response" #> [219] "MAPK6/MAPK4 signaling" #> [220] "Signaling by NOTCH2" #> [221] "tRNA processing in the nucleus" #> [222] "Glycosaminoglycan metabolism" #> [223] "Iron uptake and transport" #> [224] "Signaling by NOTCH1" #> [225] "PTEN Regulation" #> [226] "Neurotransmitter release cycle" #> [227] "miRNAs involved in DNA damage response" #> [228] "Antimicrobial peptides" #> [229] "NRF2 pathway" #> [230] "Neddylation" #> [231] "Transcriptional regulation by the AP-2 (TFAP2) family of transcription factors" #> [232] "Phase I - Functionalization of compounds" #> [233] "Pancreatic adenocarcinoma pathway" #> [234] "Vitamin D Receptor Pathway" #> [235] "miRNA targets in ECM and membrane receptors" #> [236] "miRNAs involved in DNA damage response" #> [237] "Apoptosis Modulation and Signaling" #> [238] "Thyroxine (Thyroid Hormone) Production" #> [239] "Influenza A virus infection" #> [240] "FAS pathway and Stress induction of HSP regulation" #> [241] "Quercetin and Nf-kB/ AP-1 Induced Cell Apoptosis" #> [242] "Estrogen metabolism" #> [243] "Selenium Metabolism and Selenoproteins" #> [244] "Selenium metabolism Selenoproteins" #> [245] "Estrogen metabolism" #> [246] "Selenium metabolism Selenoproteins" #> [247] "Estrogen metabolism" #> [248] "Thyroxine (Thyroid Hormone) Production" #> [249] "Serotonin HTR1 Group and FOS Pathway" #> [250] "Quercetin and Nf-kB/ AP-1 Induced Cell Apoptosis" #> [251] "Eicosanoid metabolism via Cyclo Oxygenases (COX)" #> [252] "Eicosanoid metabolism via Lipo Oxygenases (LOX)" #> [253] "Fas Ligand (FasL) pathway and Stress induction of Heat Shock Proteins (HSP) regulation" #> [254] "Selenium Metabolism and Selenoproteins" #> [255] "Lipid Metabolism Pathway" #> [256] "NRF2 pathway" #> [257] "Malate-aspartate shuttle" #> [258] "Estrogen metabolism" #> [259] "Estrogen metabolism" #> [260] "Estrogen metabolism" #> [261] "Selenium metabolism Selenoproteins" #> [262] "Estrogen metabolism" #> [263] "Elongation of (very) long chain fatty acids" #> [264] "Apoptosis Modulation and Signaling" #> [265] "Eicosanoid metabolism via Cyclo Oxygenases (COX)" #> [266] "Eicosanoid metabolism via Lipo Oxygenases (LOX)" #> [267] "PI3K-AKT-mTOR signaling pathway and therapeutic opportunities" #> [268] "miRNA regulation of prostate cancer signaling pathways" #> [269] "miRNA regulation of p53 pathway in prostate cancer" #> [270] "Cancer immunotherapy by CTLA4 blockade" #> [271] "mir-193a and MVP in colon cancer metastasis" #> [272] "LncRNA involvement in canonical Wnt signaling and colorectal cancer" #> [273] "PDGFR-beta pathway" #> [274] "Influenza A virus infection" #> [275] "Genetic alterations of lung cancer" #> [276] "Netrin-UNC5B signaling Pathway" #> [277] "EGFR Tyrosine Kinase Inhibitor Resistance" #> [278] "Transcriptional regulation of pluripotent stem cells" #> [279] "Serotonin Receptor 4/6/7 and NR3C Signaling" #> [280] "Signaling by NODAL" #> [281] "GPVI-mediated activation cascade" #> [282] "Regulation of RUNX2 expression and activity" #> [283] "NoRC negatively regulates rRNA expression" #> [284] "Degradation of beta-catenin by the destruction complex" #> [285] "BMAL1:CLOCK,NPAS2 activates circadian gene expression" #> [286] "Glycerophospholipid biosynthesis" #> [287] "Fatty acyl-CoA biosynthesis" #> [288] "SUMOylation of intracellular receptors" #> [289] "Signaling by BMP" #> [290] "Regulated Necrosis" #> [291] "RHO GTPases activate IQGAPs" #> [292] "Interleukin-20 family signaling" #> [293] "TNF signaling" #> [294] "POU5F1 (OCT4), SOX2, NANOG activate genes related to proliferation" #> [295] "Gastric cancer network 2" #> [296] "Vasopressin regulates renal water homeostasis via Aquaporins" #> [297] "Transcriptional regulation of white adipocyte differentiation" #> [298] "Extracellular matrix organization" #> [299] "DNA Damage Reversal" #> [300] "Nanoparticle triggered autophagic cell death" #> [301] "Structural Pathway of Interleukin 1 (IL-1)" #> [302] "Deubiquitination" #> [303] "Interleukin-4 and Interleukin-13 signaling" #> [304] "Gene Silencing by RNA" #> [305] "Transcriptional activity of SMAD2/SMAD3:SMAD4 heterotrimer" #> [306] "Gamma carboxylation, hypusine formation and arylsulfatase activation" #> [307] "Metabolism of steroid hormones" #> [308] "Transcriptional Regulation by E2F6" #> [309] "Signaling by Activin" #> [310] "Liver steatosis AOP" #> [311] "SUMOylation of ubiquitinylation proteins" #> [312] "Regulation of TP53 Activity through Association with Co-factors" #> [313] "Serotonin Receptor 2 and STAT3 Signaling" #> [314] "Class I MHC mediated antigen processing & presentation" #> [315] "Signaling by MST1" #> [316] "mir-124 predicted interactions with cell cycle and differentiation " #> [317] "Nicotinate metabolism" #> [318] "ATM Signaling Pathway" #> [319] "Serotonin Receptor 2 and ELK-SRF/GATA4 signaling" #> [320] "Interleukin-17 signaling" #> [321] "MyD88 dependent cascade initiated on endosome" #> [322] "TP53 Regulates Transcription of Cell Death Genes" #> [323] "Cellular hexose transport" #> [324] "tRNA modification in the nucleus and cytosol" #> [325] "Peroxisomal lipid metabolism" #> [326] "Transport of inorganic cations/anions and amino acids/oligopeptides" #> [327] "Toll-like Receptor Cascades" #> [328] "Class A/1 (Rhodopsin-like receptors)" #> [329] "Serotonin Receptor 2 and STAT3 Signaling" #> [330] "miR-517 relationship with ARCN1 and USP1" #> [331] "Codeine and Morphine Metabolism" #> [332] "H19 action Rb-E2F1 signaling and CDK-Beta-catenin activity" #> [333] "Serotonin Receptor 2 and STAT3 Signaling" #> [334] "Serotonin Receptor 2 and ELK-SRF/GATA4 signaling" #> [335] "Serotonin Receptor 4/6/7 and NR3C Signaling" #> [336] "Prostaglandin Synthesis and Regulation" #> [337] "Prader-Willi and Angelman Syndrome" #> [338] "Codeine and Morphine Metabolism" #> [339] "Aryl Hydrocarbon Receptor" #> [340] "Melatonin metabolism and effects" #> [341] "Toll-like Receptor Signaling related to MyD88" #> [342] "Aryl Hydrocarbon Receptor Netpath" #> [343] "Structural Pathway of Interleukin 1 (IL-1)" #> [344] "Renin - Angiotensin System" #> [345] "Gastric Cancer Network 2" #> [346] "Glycosylation and related congenital defects" #> [347] "TCA Cycle Nutrient Utilization and Invasiveness of Ovarian Cancer" #> [348] "TCA Cycle Nutrient Utilization and Invasiveness of Ovarian Cancer" #> [349] "MFAP5-mediated ovarian cancer cell motility and invasiveness" #> [350] "Gastric Cancer Network 1" #> [351] "Gastric Cancer Network 1" #> [352] "miR-509-3p alteration of YAP1/ECM axis" #> [353] "Simplified Interaction Map Between LOXL4 and Oxidative Stress Pathway" #> [354] "Alzheimers Disease" #> [355] "Tumor suppressor activity of SMARCB1" #> [356] "Regulation of Pgc1a expression by a Gsk3b-Tfeb signaling axis in skeletal muscle" #> [357] "Thyroid hormones production and their peripheral downstream signalling effects regarding congenital hypothyroidism" #> [358] "Head and Neck Squamous Cell Carcinoma" #> [359] "Sialic acid metabolism" #> [360] "Inhibition of exosome biogenesis and secretion by Manumycin A in CRPC cells" #> [361] "Threonine catabolism" #> [362] "SUMOylation of transcription cofactors" #> [363] "Regulation of Insulin-like Growth Factor (IGF) transport and uptake by Insulin-like Growth Factor Binding Proteins (IGFBPs)" #> [364] "MAP kinase activation" #> [365] "Neural Crest Cell Migration during Development" #> [366] "Cell migration and invasion through p75NTR" #> [367] "Neural Crest Cell Migration in Cancer" #> [368] "Regulation of mRNA stability by proteins that bind AU-rich elements" #> [369] "ATF4 activates genes" #> [370] "PI3K Cascade" #> [371] "SUMOylation of DNA damage response and repair proteins"