plotSEOuptut
# S3 method for bambu plot( se, group.variable = NULL, type = c("annotation", "pca", "heatmap"), gene_id = NULL, transcript_id = NULL )
se | An summarized experiment object obtained from |
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group.variable | Variable for grouping in plot, has be to provided if choosing to plot PCA. |
type | plot type variable, a values of annotation for a single gene with heatmap for isoform expressions, pca, or heatmap, see |
gene_id | specifying the gene_id for plotting gene annotation, either gene_id or transcript_id has to be provided when type = "annotation". |
transcript_id | specifying the transcript_id for plotting transcript annotation, either gene_id or transcript_id has to be provided when type = "annotation" |
A heatmap plot for all samples
type
indicates the type of plots to be plotted. There are two types of plots can be chosen, PCA or heatmap.