Relative quantification using MSstats including:
plots
quantifications (log2fc, pvalues, etc)
normalized abundance values
artmsQuantification( yaml_config_file, data_object = FALSE, printPDF = TRUE, display_msstats = FALSE, verbose = TRUE )
yaml_config_file | (char) The yaml file name and location |
---|---|
data_object | (logical) flag to indicate whether the configuration file is a string to a file that should be opened or config object (yaml) |
printPDF | (logical) if |
display_msstats | (logical) if |
verbose | (logical) |
The relative quantification of the conditions and comparisons specified in the keys/contrast file resulting from running MSstats, in addition to quality control plots (if selected)
# \donttest{ artmsQuantification(yaml_config_file = "path/to/artms-ab-config.yaml")#> Warning: cannot open file 'path/to/artms-ab-config.yaml': No such file or directory#> Error in readLines(con): cannot open the connection# }