Affymetrix Rat Toxicology U34 Array annotation data (chip rtu34)


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Documentation for package ‘rtu34.db’ version 2.2.0

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rtu34 Bioconductor annotation data package
rtu34ACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
rtu34ALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
rtu34CHR Map Manufacturer IDs to Chromosomes
rtu34CHRLENGTHS A named vector for the length of each of the chromosomes
rtu34CHRLOC Map Manufacturer IDs to Chromosomal Location
rtu34ENSEMBL Map Ensembl gene accession numbers with manufacturer identifiers
rtu34ENSEMBL2PROBE Map Ensembl gene accession numbers with manufacturer identifiers
rtu34ENTREZID Map between Manufacturer Identifiers and Entrez Gene
rtu34ENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
rtu34ENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
rtu34GENENAME Map between Manufacturer IDs and Genes
rtu34GO Map between Manufacturer IDs and Gene Ontology (GO)
rtu34GO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
rtu34GO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
rtu34LOCUSID Map between Manufacturer Identifiers and Entrez Gene
rtu34MAP Map between Manufacturer Identifiers and cytogenetic maps/bands
rtu34MAPCOUNTS Number of mapped keys for the maps in package rtu34.db
rtu34ORGANISM The Organism for rtu34
rtu34PATH Mappings between probe identifiers and KEGG pathway identifiers
rtu34PATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
rtu34PFAM Map Manufacturer IDs to Pfam IDs
rtu34PMID Map between Manufacturer Identifiers and PubMed Identifiers
rtu34PMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
rtu34PROSITE Map Manufacturer IDs to PROSITE ID
rtu34REFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
rtu34SYMBOL Map between Manufacturer Identifiers and Gene Symbols
rtu34UNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
rtu34_dbconn Collect information about the package annotation DB
rtu34_dbfile Collect information about the package annotation DB
rtu34_dbInfo Collect information about the package annotation DB
rtu34_dbschema Collect information about the package annotation DB