org.Sc.sgdGENENAME       package:org.Sc.sgd.db       R Documentation

_M_a_p _b_e_t_w_e_e_n _O_R_F _I_D_s _a_n_d _G_e_n_e_s

_D_e_s_c_r_i_p_t_i_o_n:

     org.Sc.sgdGENENAME is an R object that maps ORF identifiers to the
     corresponding gene name.

_D_e_t_a_i_l_s:

     Each ORF identifier maps to a named vector containing the gene
     name. The vector name corresponds to the ORF identifier. If the 
     gene name is unknown, the vector will contain an 'NA'.

     Gene names currently include both the official (validated by a
     nomenclature committee) and preferred names (interim selected for
     display) for genes. Efforts are being made to differentiate the
     two by adding a name to the vector.

     Mappings were based on data provided by: Yeast Genome (
     ftp://genome-ftp.stanford.edu/pub/yeast/data_download ) on
     2008-Mar29

_E_x_a_m_p_l_e_s:

             x <- org.Sc.sgdGENENAME
             # Get the gene names that are mapped to an ORF identifier
             mapped_genes <- mappedkeys(x)
             # Convert to a list
             xx <- as.list(x[mapped_genes])
             if(length(xx) > 0) {
               # Get the GENE NAME for the first five genes
               xx[1:5]
               # Get the first one
               xx[[1]]
             }

