org.Hs.eg_dbconn {org.Hs.eg.db} | R Documentation |
Some convenience functions for getting a connection object to (or collecting information about) the package annotation DB.
org.Hs.eg_dbconn() org.Hs.eg_dbfile() org.Hs.eg_dbschema(file="", show.indices=FALSE) org.Hs.eg_dbInfo()
file |
A connection, or a character string naming the file to print to (see
the file argument of the cat function for
the details).
|
show.indices |
The CREATE INDEX statements are not shown by default.
Use show.indices=TRUE to get them.
|
org.Hs.eg_dbconn
returns a connection object to the package
annotation DB.
IMPORTANT: Don't call dbDisconnect
on the connection
object returned by org.Hs.eg_dbconn
or you will
break all the AnnDbObj
objects defined in this package!
org.Hs.eg_dbfile
returns the path (character string) to the
package annotation DB (this is an SQLite file).
org.Hs.eg_dbschema
prints the schema definition of the
package annotation DB.
org.Hs.eg_dbInfo
prints other information about the package
annotation DB.
org.Hs.eg_dbconn
: a DBIConnection object representing an open
connection to the package annotation DB.
org.Hs.eg_dbfile
: a character string with the path to the
package annotation DB.
org.Hs.eg_dbschema
: none (invisible NULL
).
org.Hs.eg_dbInfo
: none (invisible NULL
).
dbGetQuery
,
dbConnect
,
dbconn
,
dbfile
,
dbschema
,
dbInfo
## Count the number of rows in the "genes" table: dbGetQuery(org.Hs.eg_dbconn(), "SELECT COUNT(*) FROM genes") ## The connection object returned by org.Hs.eg_dbconn() was created with: dbConnect(SQLite(), dbname=org.Hs.eg_dbfile(), cache_size=64000, synchronous=0) org.Hs.eg_dbschema() org.Hs.eg_dbInfo()