org.Hs.egPROSITE        package:org.Hs.eg.db        R Documentation

_M_a_p _E_n_t_r_e_z _G_e_n_e _I_D_s _t_o _P_R_O_S_I_T_E _I_D

_D_e_s_c_r_i_p_t_i_o_n:

     org.Hs.egPROSITE is an R object that provides mappings between a
     entrez gene identifier and the associated PROSITE identifiers.

_D_e_t_a_i_l_s:

     Each entrez gene identifier maps to a named vector of PROSITE
     identifiers.  The name for each PROSITE identifier is the IPI
     accession numbe where this PROSITE identifier is found.

     If the PROSITE is a named NA, it means that the associated Entrez
     Gene id of this entrez gene identifier is found in an IPI entry of
     the IPI database, but there is no PROSITE identifier in the entry.

     If the PROSITE is a non-named NA, it means that the associated
     Entrez Gene id of this entrez gene identifier is not found in any
     IPI entry of the IPI database.

     Mappings were based on data provided by: The International Protein
     Index ( ftp://ftp.ebi.ac.uk/pub/databases/IPI/current ) on
     2008-Mar19

_R_e_f_e_r_e_n_c_e_s:

     Kersey P. J., Duarte J., Williams A., Karavidopoulou Y., Birney
     E., Apweiler R. The International Protein Index: An integrated
     database for proteomics experiments. Proteomics 4(7): 1985-1988
     (2004) <URL: http://www.ebi.ac.uk/IPI/IPIhelp.html>

_E_x_a_m_p_l_e_s:

                     x <- org.Hs.egPROSITE
             # Get the entrez gene identifiers that are mapped to any PROSITE ID
             mapped_genes <- mappedkeys(x)
             # Convert to a list
             xxx <- as.list(x[mapped_genes])
             # randomly display 10 genes
             xxx[sample(1:length(xxx), 10)]

