mouseLLMappingsLL2GO {mouseLLMappings} | R Documentation |
mouseLLMappingsLL2GO maps Entrez Gene identifiers to Gene Ontology (GO) identifiers representing functions of the products of genes correspinding to the Entrez Gene identifiers
This is an environment object containing key and value pairs. Keys are Entrez Gene identifiers and values are GO identifiers. Values are vectors of length 1 or more depending on whether a Entrez Gene identifier can be mapped to one or more Gene Ontology identifiers. Names of values are evidence code.
The evidence codes in use include:
IMP: inferred from mutant phenotype IGI: inferred from genetic interaction IPI: inferred from physical interaction ISS: inferred from sequence similarity IDA: inferred from direct assay IEP: inferred from expression pattern IEA: inferred from electronic annotation TAS: traceable author statement NAS: non-traceable author statement ND: no biological data avai
Mappings were derived from data provided by:
Entrez Gene: Not available
Package built: Wed Aug 29 18:29:47 2007
ftp://ftp.ncbi.nih.gov/refseq/LocusLink/LL_tmpl.gz
require("annotate") || stop("annotate unavailable") xx <- as.list(mouseLLMappingsLL2GO) if(length(xx) > 0){ # Get the value of the first key xx[[1]] # Get the values for a few keys if(length(xx) >= 3){ xx[1:3] } }