GE CodeLink UniSet Mouse I Bioarray (~10 000 mouse gene targets) annotation data (chip m10kcod)


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Documentation for package ‘m10kcod.db’ version 2.0.0

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m10kcod Bioconductor annotation data package
m10kcodACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
m10kcodALIAS2PROBE Map between Common Gene Symbol Identifiers and Manufacturer Identifiers
m10kcodCHR Map Manufacturer IDs to Chromosomes
m10kcodCHRLENGTHS A named vector for the length of each of the chromosomes
m10kcodCHRLOC Map Manufacturer IDs to Chromosomal Location
m10kcodENSEMBL Map Ensembl gene accession numbers with manufacturer identifiers
m10kcodENSEMBL2PROBE Map Ensembl gene accession numbers with manufacturer identifiers
m10kcodENTREZID Map between Manufacturer Identifiers and Entrez Gene
m10kcodENZYME Map between Manufacturer IDs and Enzyme Commission (EC) Numbers
m10kcodENZYME2PROBE Map between Enzyme Commission Numbers and Manufacturer Identifiers
m10kcodGENENAME Map between Manufacturer IDs and Genes
m10kcodGO Map between Manufacturer IDs and Gene Ontology (GO)
m10kcodGO2ALLPROBES Map between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
m10kcodGO2PROBE Map between Gene Ontology (GO) and Manufacturer Identifiers
m10kcodLOCUSID Map between Manufacturer Identifiers and Entrez Gene
m10kcodMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
m10kcodMAPCOUNTS Number of mapped keys for the maps in package m10kcod.db
m10kcodMGI Map MGI gene accession numbers with manufacturer identifiers
m10kcodMGI2PROBE Map MGI gene accession numbers with manufacturer identifiers
m10kcodORGANISM The Organism for m10kcod
m10kcodPATH Mappings between probe identifiers and KEGG pathway identifiers
m10kcodPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
m10kcodPFAM Map Manufacturer IDs to Pfam IDs
m10kcodPMID Map between Manufacturer Identifiers and PubMed Identifiers
m10kcodPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
m10kcodPROSITE Map Manufacturer IDs to PROSITE ID
m10kcodREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
m10kcodSYMBOL Map between Manufacturer Identifiers and Gene Symbols
m10kcodUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers
m10kcod_dbconn Collect information about the package annotation DB
m10kcod_dbfile Collect information about the package annotation DB
m10kcod_dbInfo Collect information about the package annotation DB
m10kcod_dbschema Collect information about the package annotation DB