m10kcodMAPCOUNTS {m10kcod.db}R Documentation

Number of mapped keys for the maps in package m10kcod.db

Description

m10kcodMAPCOUNTS provides the "map count" (i.e. the count of mapped keys) for each map in package m10kcod.db.

Details

This "map count" information is precalculated and stored in the package annotation DB. This allows some quality control and is used by the checkMAPCOUNTS function defined in AnnotationDbi to compare and validate different methods (like count.mappedkeys(x) or sum(!is.na(as.list(x)))) for getting the "map count" of a given map.

See Also

mappedkeys, count.mappedkeys, checkMAPCOUNTS

Examples

  m10kcodMAPCOUNTS
  mapnames <- names(m10kcodMAPCOUNTS)
  m10kcodMAPCOUNTS[mapnames[1]]
  x <- get(mapnames[1])
  sum(!is.na(as.list(x)))
  count.mappedkeys(x)   # much faster!

  ## Check the "map count" of all the maps in package m10kcod.db
  checkMAPCOUNTS("m10kcod.db")

[Package m10kcod.db version 2.0.0 Index]