Illumina Sentrix RatRef-12 version 1 Annotation Data (lumiRatV1)


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Documentation for package ‘lumiRatV1’ version 1.3.1

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lumiRatV1 Bioconductor annotation data package
lumiRatV1ACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
lumiRatV1CHR Map Manufacturer IDs to Chromosomes
lumiRatV1CHRLENGTHS A named vector for the length of each of the chromosomes
lumiRatV1CHRLOC Map Manufacturer IDs to Chromosomal Location
lumiRatV1ENTREZID Map between Manufacturer Identifiers and Entrez Gene
lumiRatV1ENZYME Map Between Manufacturer IDs and Enzyme Commission (EC) Numbers
lumiRatV1ENZYME2PROBE Map Between Enzyme Commission Numbers and Manufacturer Identifiers
lumiRatV1GENENAME Map Between Manufacturer IDs and Genes
lumiRatV1GO Map between Manufacturer IDs and Gene Ontology (GO)
lumiRatV1GO2ALLPROBES Map Between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
lumiRatV1GO2PROBE Map Between Gene Ontology (GO) and Manufacturer Identifiers
lumiRatV1LOCUSID Map between Manufacturer Identifiers and Entrez Gene
lumiRatV1MAP Map between Manufacturer Identifiers and cytogenetic maps/bands
lumiRatV1MAPCOUNTS Quality control information for lumiRatV1
lumiRatV1ORGANISM The Organism for lumiRatV1
lumiRatV1PATH Mappings between probe identifiers and KEGG pathway identifiers
lumiRatV1PATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
lumiRatV1PFAM Map Manufacturer IDs to Pfam IDs
lumiRatV1PMID Map between Manufacturer Identifiers and PubMed Identifiers
lumiRatV1PMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
lumiRatV1PROBEID2NUID Map between Illumina ProbeID and nuID
lumiRatV1PROSITE Map Manufacturer IDs to PROSITE ID
lumiRatV1QC Quality control information for lumiRatV1
lumiRatV1QCDATA Quality control information for lumiRatV1
lumiRatV1REFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
lumiRatV1SUMFUNC Map between Manufacturer Identifiers and Gene Function Summaries
lumiRatV1SYMBOL Map between Manufacturer Identifiers and Gene Symbols
lumiRatV1TARGETID2NUID Map between Illumina TargetID and nuID
lumiRatV1UNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers