illuminaMousev2ProbeIDMGI {illuminaMousev2ProbeID.db}R Documentation

Map MGI gene accession numbers with manufacturer identifiers

Description

illuminaMousev2ProbeIDMGI is an R object that contains mappings between manufacturer identifiers and Jackson Laboratory MGI gene accession numbers.

Details

This object is a simple mapping of manufacturer identifiers http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene to MGI gene Accession Numbers.

Mappings were based on data provided by: Entrez Gene ( ftp://ftp.ncbi.nlm.nih.gov/gene/DATA ) on 2008-Apr2

Examples

    x <- illuminaMousev2ProbeIDMGI
    # Get the manufacturer IDs that are mapped to an MGI ID
    mapped_genes <- mappedkeys(x)
    # Convert to a list
    xx <- as.list(x[mapped_genes])
    if(length(xx) > 0) {
      # Get the MGI IDs for the first five genes
      xx[1:5]
      # Get the first one
      xx[[1]]
    }
    #For the reverse map MGI2EG:
    # Convert to a list
    xx <- as.list(illuminaMousev2ProbeIDMGI2PROBE)
    if(length(xx) > 0){
       # Gets the manufacturer IDs for the first five MGI IDs
       xx[1:5]
       # Get the first one
       xx[[1]]
    }

[Package illuminaMousev2ProbeID.db version 1.1.1 Index]