A data package containing annotation data for 8.1k human CpG island microarray


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Documentation for package ‘hcgi8k’ version 1.1.0

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hcgi8k Bioconductor annotation data package
hcgi8kACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
hcgi8kCHR Map Manufacturer IDs to Chromosomes
hcgi8kCHRLENGTHS A named vector for the length of each of the chromosomes
hcgi8kCHRLOC Map Manufacturer IDs to Chromosomal Location
hcgi8kENTREZID Map between Manufacturer Identifiers and Entrez Gene
hcgi8kENZYME Map Between Manufacturer IDs and Enzyme Commission (EC) Numbers
hcgi8kENZYME2PROBE Map Between Enzyme Commission Numbers and Manufacturer Identifiers
hcgi8kGENENAME Map Between Manufacturer IDs and Genes
hcgi8kGO Map between Manufacturer IDs and Gene Ontology (GO)
hcgi8kGO2ALLPROBES Map Between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
hcgi8kGO2PROBE Map Between Gene Ontology (GO) and Manufacturer Identifiers
hcgi8kLOCUSID Map between Manufacturer Identifiers and Entrez Gene
hcgi8kMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
hcgi8kMAPCOUNTS Quality control information for hcgi8k
hcgi8kOMIM Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
hcgi8kORGANISM The Organism for hcgi8k
hcgi8kPATH Mappings between probe identifiers and KEGG pathway identifiers
hcgi8kPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
hcgi8kPFAM Map Manufacturer IDs to Pfam IDs
hcgi8kPMID Map between Manufacturer Identifiers and PubMed Identifiers
hcgi8kPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
hcgi8kPROSITE Map Manufacturer IDs to PROSITE ID
hcgi8kQC Quality control information for hcgi8k
hcgi8kQCDATA Quality control information for hcgi8k
hcgi8kREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
hcgi8kSUMFUNC Map between Manufacturer Identifiers and Gene Function Summaries
hcgi8kSYMBOL Map between Manufacturer Identifiers and Gene Symbols
hcgi8kUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers