agARACYC {ag.db}R Documentation

Mappings between probe identifiers and KEGG pathway identifiers

Description

AraCyc http://www.arabidopsis.org/tools/aracyc/ maintains pathway data for Arabidopsis thaliana. agARACYC maps probe identifiers to the common names of the pathways in which the genes represented by the probe identifiers are involved. Information is obtained from AraCyc.

Details

Annotation based on data provided by: Tair ( ftp://ftp.arabidopsis.org/Pathways/aracyc_dump_20070703 ) on 2007-Oct04

References

http://www.genome.ad.jp/kegg/

Examples

  x <- agARACYC
  # Get the probe identifiers that are mapped to pathways
  mapped_probes <- mappedkeys(x)
  # Convert to a list
  xx <- as.list(x[mapped_probes])
  if(length(xx) > 0) {
    # Get the pathways for the first five probes
    xx[1:5]
    # For the first probe
    xx[[1]]
  }

[Package ag.db version 2.2.0 Index]