SHDZ http://genome-www5.stanford.edu/ Annotation Data (SHDZ)


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Documentation for package ‘SHDZ’ version 2.2.0

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SHDZ Bioconductor annotation data package
SHDZACCNUM Map Manufacturer identifiers to GenBank Accession Numbers
SHDZCHR Map Manufacturer IDs to Chromosomes
SHDZCHRLENGTHS A named vector for the length of each of the chromosomes
SHDZCHRLOC Map Manufacturer IDs to Chromosomal Location
SHDZENTREZID Map between Manufacturer Identifiers and Entrez Gene
SHDZENZYME Map Between Manufacturer IDs and Enzyme Commission (EC) Numbers
SHDZENZYME2PROBE Map Between Enzyme Commission Numbers and Manufacturer Identifiers
SHDZGENENAME Map Between Manufacturer IDs and Genes
SHDZGO Map between Manufacturer IDs and Gene Ontology (GO)
SHDZGO2ALLPROBES Map Between Gene Ontology (GO) Identifiers and all Manufacturer Identifiers in the subtree
SHDZGO2PROBE Map Between Gene Ontology (GO) and Manufacturer Identifiers
SHDZLOCUSID Map between Manufacturer Identifiers and Entrez Gene
SHDZMAP Map between Manufacturer Identifiers and cytogenetic maps/bands
SHDZMAPCOUNTS Quality control information for SHDZ
SHDZOMIM Map between Manufacturer Identifiers and Mendelian Inheritance in Man (MIM) identifiers
SHDZORGANISM The Organism for SHDZ
SHDZPATH Mappings between probe identifiers and KEGG pathway identifiers
SHDZPATH2PROBE Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers
SHDZPFAM Map Manufacturer IDs to Pfam IDs
SHDZPMID Map between Manufacturer Identifiers and PubMed Identifiers
SHDZPMID2PROBE Map between PubMed Identifiers and Manufacturer Identifiers
SHDZPROSITE Map Manufacturer IDs to PROSITE ID
SHDZQC Quality control information for SHDZ
SHDZQCDATA Quality control information for SHDZ
SHDZREFSEQ Map between Manufacturer Identifiers and RefSeq Identifiers
SHDZSYMBOL Map between Manufacturer Identifiers and Gene Symbols
SHDZUNIGENE Map between Manufacturer Identifiers and UniGene cluster identifiers