OperonHumanV3PATH2PROBE {OperonHumanV3.db}R Documentation

Map between Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway identifiers and Manufacturer Identifiers

Description

OperonHumanV3PATH2PROBE is an R object that provides mappings between KEGG identifiers and manufacturer identifiers.

Details

Each KEGG identifier is mapped to a named vector of manufacturer identifiers. The name represents the KEGG identifier and the vector contains all manufacturer identifiers that are found in that particular pathway. An NA is reported for any KEGG identifier that cannot be mapped to any manufacturer identifiers.

Pathway name for a given pathway identifier can be obtained using the KEGG data package that can either be built using AnnBuilder or downloaded from Bioconductor http://www.bioconductor.org.

Graphic presentations of pathways are searchable at http://www.genome.ad.jp/kegg/pathway.html using pathway identifiers as keys.

Mappings were based on data provided by: KEGG GENOME ( ftp://ftp.genome.jp/pub/kegg/genomes ) on 2008-Apr1

References

http://www.genome.ad.jp/kegg/

Examples

    # Convert the object to a list
    xx <- as.list(OperonHumanV3PATH2PROBE)
    if(length(xx) > 0){
        # Get the probe identifiers for the first two pathway identifiers
        xx[1:2]
        # Get the first one
        xx[[1]]
    } 

[Package OperonHumanV3.db version 2.2.0 Index]