pfamSMART2AC {PFAM}R Documentation

Mappings from SMART ID to Accession number

Description

Mapping function from SMART ID (SMART) to the associated Accession number (AC)

Usage

pfamSMART2AC(smart=NULL)

Arguments

smart A character vector of SMART ID or NULL (default)

Details

If smart is a vector of SMART ID, pfamSMART2AC will return a list of associated Accession number for the given smart. If smart is NULL, pfamSMART2AC(smart=NULL) (or pfamSMART2AC()) will return a list of associated Accession number for all the SMART ID in the database. Extra information: None More Details: SMART (a Simple Modular Architecture Research Tool, http://smart.embl-heidelberg.de/) allows the identification and annotation of genetically mobile domains and the analysis of domain architectures. Reference: (1) Schultz et al. (1998) Proc. Natl. Acad. Sci. USA 95, 5857-5864. (2) Letunic et al. (2004) Nucleic Acids Res 32, D142-D144

Value

A list of Accession number.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    SMART2AC <- pfamSMART2AC()
    head(SMART2AC)
    pfamSMART2AC(smart=sample(names(SMART2AC), 3))
## End(Not run)

[Package PFAM version 1.14.1 Index]