pfamAC2CAZY {PFAM}R Documentation

Mappings from Accession number to CAZY ID

Description

Mapping function from Accession number (AC) to the associated CAZY ID (CAZY)

Usage

pfamAC2CAZY(ac=NULL)

Arguments

ac A character vector of Accession number or NULL (default)

Details

If ac is a vector of Accession number, pfamAC2CAZY will return a list of associated CAZY ID for the given ac. If ac is NULL, pfamAC2CAZY(ac=NULL) (or pfamAC2CAZY()) will return a list of associated CAZY ID for all the Accession number in the database. Extra information: None More Details: The CAZy database (http://afmb.cnrs-mrs.fr/CAZY/) describes the families of structurally-related catalytic and carbohydrate-binding modules (or functional domains) of enzymes that degrade, modify, or create glycosidic bonds.

Value

A list of CAZY ID.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    AC2CAZY <- pfamAC2CAZY()
    head(AC2CAZY)
    pfamAC2CAZY(ac=sample(names(AC2CAZY), 3))
## End(Not run)

[Package PFAM version 1.14.1 Index]