pfamAC2PDB {PFAM} | R Documentation |
Mapping function from Accession number (AC) to the associated PDB ID (PDB)
pfamAC2PDB(ac=NULL)
ac |
A character vector of Accession number or NULL (default) |
If ac
is a vector of Accession number, pfamAC2PDB will
return a list of associated PDB ID for the given ac
. If
ac
is NULL, pfamAC2PDB(ac=NULL) (or pfamAC2PDB())
will return a list of associated PDB ID for all the Accession number in
the database.
Extra information: Start and end points
More Details: PDB (http://www.rcsb.org/pdb/index.html), the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data. Reference: H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne: The Protein Data Bank. Nucleic Acids Research , 28 pp. 235-242 (2000)
A list of PDB ID.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: AC2PDB <- pfamAC2PDB() head(AC2PDB) pfamAC2PDB(ac=sample(names(AC2PDB), 3)) ## End(Not run)