pfamPROSITE2AC {PFAM} | R Documentation |
Mapping function from PROSITE ID (PROSITE) to the associated Accession number (AC)
pfamPROSITE2AC(prosite=NULL)
prosite |
A character vector of PROSITE ID or NULL (default) |
If prosite
is a vector of PROSITE ID, pfamPROSITE2AC will
return a list of associated Accession number for the given prosite
. If
prosite
is NULL, pfamPROSITE2AC(prosite=NULL) (or pfamPROSITE2AC())
will return a list of associated Accession number for all the PROSITE ID in
the database.
Extra information: None
More Details: PROSITE (http://www.expasy.ch/prosite/) is a database of protein families and domains. It consists of biologically significant sites, patterns and profiles that help to reliably identify to which known protein family (if any) a new sequence belongs. Reference: Hulo N., Sigrist C.J.A., Le Saux V., Langendijk-Genevaux P.S., Bordoli L., Gattiker A., De Castro E., Bucher P., Bairoch A. Recent improvements to the PROSITE database. Nucl. Acids. Res. 32:D134-D137(2004)
A list of Accession number.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: PROSITE2AC <- pfamPROSITE2AC() head(PROSITE2AC) pfamPROSITE2AC(prosite=sample(names(PROSITE2AC), 3)) ## End(Not run)