pfamAC2PDB {PFAM}R Documentation

Mappings from Accession number to PDB ID

Description

Mapping function from Accession number (AC) to the associated PDB ID (PDB)

Usage

pfamAC2PDB(ac=NULL)

Arguments

ac A character vector of Accession number or NULL (default)

Details

If ac is a vector of Accession number, pfamAC2PDB will return a list of associated PDB ID for the given ac. If ac is NULL, pfamAC2PDB(ac=NULL) (or pfamAC2PDB()) will return a list of associated PDB ID for all the Accession number in the database. Extra information: Start and end points More Details: PDB (http://www.rcsb.org/pdb/index.html), the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data. Reference: H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne: The Protein Data Bank. Nucleic Acids Research , 28 pp. 235-242 (2000)

Value

A list of PDB ID.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    AC2PDB <- pfamAC2PDB()
    head(AC2PDB)
    pfamAC2PDB(ac=sample(names(AC2PDB), 3))
## End(Not run)

[Package PFAM version 1.14.1 Index]