pfamPDB2AC {PFAM} | R Documentation |
Mapping function from PDB ID (PDB) to the associated Accession number (AC)
pfamPDB2AC(pdb=NULL)
pdb |
A character vector of PDB ID or NULL (default) |
If pdb
is a vector of PDB ID, pfamPDB2AC will
return a list of associated Accession number for the given pdb
. If
pdb
is NULL, pfamPDB2AC(pdb=NULL) (or pfamPDB2AC())
will return a list of associated Accession number for all the PDB ID in
the database.
Extra information: None
More Details: PDB (http://www.rcsb.org/pdb/index.html), the single worldwide repository for the processing and distribution of 3-D biological macromolecular structure data. Reference: H.M. Berman, J. Westbrook, Z. Feng, G. Gilliland, T.N. Bhat, H. Weissig, I.N. Shindyalov, P.E. Bourne: The Protein Data Bank. Nucleic Acids Research , 28 pp. 235-242 (2000)
A list of Accession number.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: PDB2AC <- pfamPDB2AC() head(PDB2AC) pfamPDB2AC(pdb=sample(names(PDB2AC), 3)) ## End(Not run)