pfamAC2PROSITEPROFILE {PFAM}R Documentation

Mappings from Accession number to PROSITE_PROFILE ID

Description

Mapping function from Accession number (AC) to the associated PROSITE_PROFILE ID (PROSITEPROFILE)

Usage

pfamAC2PROSITEPROFILE(ac=NULL)

Arguments

ac A character vector of Accession number or NULL (default)

Details

If ac is a vector of Accession number, pfamAC2PROSITEPROFILE will return a list of associated PROSITE_PROFILE ID for the given ac. If ac is NULL, pfamAC2PROSITEPROFILE(ac=NULL) (or pfamAC2PROSITEPROFILE()) will return a list of associated PROSITE_PROFILE ID for all the Accession number in the database. Extra information: None More Details: None

Value

A list of PROSITE_PROFILE ID.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    AC2PROSITEPROFILE <- pfamAC2PROSITEPROFILE()
    head(AC2PROSITEPROFILE)
    pfamAC2PROSITEPROFILE(ac=sample(names(AC2PROSITEPROFILE), 3))
## End(Not run)

[Package PFAM version 1.14.1 Index]