pfamSCOP2AC {PFAM} | R Documentation |
Mapping function from SCOP ID (SCOP) to the associated Accession number (AC)
pfamSCOP2AC(scop=NULL)
scop |
A character vector of SCOP ID or NULL (default) |
If scop
is a vector of SCOP ID, pfamSCOP2AC will
return a list of associated Accession number for the given scop
. If
scop
is NULL, pfamSCOP2AC(scop=NULL) (or pfamSCOP2AC())
will return a list of associated Accession number for all the SCOP ID in
the database.
Extra information: None
More Details: Structural Classification of Proteins (http://scop.mrc-lmb.cam.ac.uk/scop/index.html). Reference: Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540
A list of Accession number.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: SCOP2AC <- pfamSCOP2AC() head(SCOP2AC) pfamSCOP2AC(scop=sample(names(SCOP2AC), 3)) ## End(Not run)