pfamAC2SMART {PFAM} | R Documentation |
Mapping function from Accession number (AC) to the associated SMART ID (SMART)
pfamAC2SMART(ac=NULL)
ac |
A character vector of Accession number or NULL (default) |
If ac
is a vector of Accession number, pfamAC2SMART will
return a list of associated SMART ID for the given ac
. If
ac
is NULL, pfamAC2SMART(ac=NULL) (or pfamAC2SMART())
will return a list of associated SMART ID for all the Accession number in
the database.
Extra information: None
More Details: SMART (a Simple Modular Architecture Research Tool, http://smart.embl-heidelberg.de/) allows the identification and annotation of genetically mobile domains and the analysis of domain architectures. Reference: (1) Schultz et al. (1998) Proc. Natl. Acad. Sci. USA 95, 5857-5864. (2) Letunic et al. (2004) Nucleic Acids Res 32, D142-D144
A list of SMART ID.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: AC2SMART <- pfamAC2SMART() head(AC2SMART) pfamAC2SMART(ac=sample(names(AC2SMART), 3)) ## End(Not run)