pfamPROSITEPROFILE2AC {PFAM}R Documentation

Mappings from PROSITE_PROFILE ID to Accession number

Description

Mapping function from PROSITE_PROFILE ID (PROSITEPROFILE) to the associated Accession number (AC)

Usage

pfamPROSITEPROFILE2AC(prositeprofile=NULL)

Arguments

prositeprofile A character vector of PROSITE_PROFILE ID or NULL (default)

Details

If prositeprofile is a vector of PROSITE_PROFILE ID, pfamPROSITEPROFILE2AC will return a list of associated Accession number for the given prositeprofile. If prositeprofile is NULL, pfamPROSITEPROFILE2AC(prositeprofile=NULL) (or pfamPROSITEPROFILE2AC()) will return a list of associated Accession number for all the PROSITE_PROFILE ID in the database. Extra information: None More Details: None

Value

A list of Accession number.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    PROSITEPROFILE2AC <- pfamPROSITEPROFILE2AC()
    head(PROSITEPROFILE2AC)
    pfamPROSITEPROFILE2AC(prositeprofile=sample(names(PROSITEPROFILE2AC), 3))
## End(Not run)

[Package PFAM version 1.14.1 Index]