pfamAC2PRINTS {PFAM}R Documentation

Mappings from Accession number to PRINTS ID

Description

Mapping function from Accession number (AC) to the associated PRINTS ID (PRINTS)

Usage

pfamAC2PRINTS(ac=NULL)

Arguments

ac A character vector of Accession number or NULL (default)

Details

If ac is a vector of Accession number, pfamAC2PRINTS will return a list of associated PRINTS ID for the given ac. If ac is NULL, pfamAC2PRINTS(ac=NULL) (or pfamAC2PRINTS()) will return a list of associated PRINTS ID for all the Accession number in the database. Extra information: None More Details: PRINTS (http://umber.sbs.man.ac.uk/dbbrowser/PRINTS/) is a compendium of protein fingerprints.

Value

A list of PRINTS ID.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    AC2PRINTS <- pfamAC2PRINTS()
    head(AC2PRINTS)
    pfamAC2PRINTS(ac=sample(names(AC2PRINTS), 3))
## End(Not run)

[Package PFAM version 1.14.1 Index]