pfamAC2HOMSTRAD {PFAM} | R Documentation |
Mapping function from Accession number (AC) to the associated HOMSTRAD ID (HOMSTRAD)
pfamAC2HOMSTRAD(ac=NULL)
ac |
A character vector of Accession number or NULL (default) |
If ac
is a vector of Accession number, pfamAC2HOMSTRAD will
return a list of associated HOMSTRAD ID for the given ac
. If
ac
is NULL, pfamAC2HOMSTRAD(ac=NULL) (or pfamAC2HOMSTRAD())
will return a list of associated HOMSTRAD ID for all the Accession number in
the database.
Extra information: None
More Details: HOMSTRAD (HOMologous STRucture Alignment Database, http://www-cryst.bioc.cam.ac.uk/homstrad/) is a curated database of structure-based alignments for homologous protein families. Reference: Mizuguchi K, Deane CM, Blundell TL, Overington JP. (1998) HOMSTRAD: a database of protein structure alignments for homologous families. Protein Science 7:2469-2471.
A list of HOMSTRAD ID.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: AC2HOMSTRAD <- pfamAC2HOMSTRAD() head(AC2HOMSTRAD) pfamAC2HOMSTRAD(ac=sample(names(AC2HOMSTRAD), 3)) ## End(Not run)