pfamAC2SCOP {PFAM}R Documentation

Mappings from Accession number to SCOP ID

Description

Mapping function from Accession number (AC) to the associated SCOP ID (SCOP)

Usage

pfamAC2SCOP(ac=NULL)

Arguments

ac A character vector of Accession number or NULL (default)

Details

If ac is a vector of Accession number, pfamAC2SCOP will return a list of associated SCOP ID for the given ac. If ac is NULL, pfamAC2SCOP(ac=NULL) (or pfamAC2SCOP()) will return a list of associated SCOP ID for all the Accession number in the database. Extra information: Placement More Details: Structural Classification of Proteins (http://scop.mrc-lmb.cam.ac.uk/scop/index.html). Reference: Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540

Value

A list of SCOP ID.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    AC2SCOP <- pfamAC2SCOP()
    head(AC2SCOP)
    pfamAC2SCOP(ac=sample(names(AC2SCOP), 3))
## End(Not run)

[Package PFAM version 1.14.1 Index]