pfamAC2SCOP {PFAM} | R Documentation |
Mapping function from Accession number (AC) to the associated SCOP ID (SCOP)
pfamAC2SCOP(ac=NULL)
ac |
A character vector of Accession number or NULL (default) |
If ac
is a vector of Accession number, pfamAC2SCOP will
return a list of associated SCOP ID for the given ac
. If
ac
is NULL, pfamAC2SCOP(ac=NULL) (or pfamAC2SCOP())
will return a list of associated SCOP ID for all the Accession number in
the database.
Extra information: Placement
More Details: Structural Classification of Proteins (http://scop.mrc-lmb.cam.ac.uk/scop/index.html). Reference: Murzin A. G., Brenner S. E., Hubbard T., Chothia C. (1995). SCOP: a structural classification of proteins database for the investigation of sequences and structures. J. Mol. Biol. 247, 536-540
A list of SCOP ID.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: AC2SCOP <- pfamAC2SCOP() head(AC2SCOP) pfamAC2SCOP(ac=sample(names(AC2SCOP), 3)) ## End(Not run)