pfamAC2PROSITE {PFAM} | R Documentation |
Mapping function from Accession number (AC) to the associated PROSITE ID (PROSITE)
pfamAC2PROSITE(ac=NULL)
ac |
A character vector of Accession number or NULL (default) |
If ac
is a vector of Accession number, pfamAC2PROSITE will
return a list of associated PROSITE ID for the given ac
. If
ac
is NULL, pfamAC2PROSITE(ac=NULL) (or pfamAC2PROSITE())
will return a list of associated PROSITE ID for all the Accession number in
the database.
Extra information: None
More Details: PROSITE (http://www.expasy.ch/prosite/) is a database of protein families and domains. It consists of biologically significant sites, patterns and profiles that help to reliably identify to which known protein family (if any) a new sequence belongs. Reference: Hulo N., Sigrist C.J.A., Le Saux V., Langendijk-Genevaux P.S., Bordoli L., Gattiker A., De Castro E., Bucher P., Bairoch A. Recent improvements to the PROSITE database. Nucl. Acids. Res. 32:D134-D137(2004)
A list of PROSITE ID.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: AC2PROSITE <- pfamAC2PROSITE() head(AC2PROSITE) pfamAC2PROSITE(ac=sample(names(AC2PROSITE), 3)) ## End(Not run)