pfamSMART2AC {PFAM} | R Documentation |
Mapping function from SMART ID (SMART) to the associated Accession number (AC)
pfamSMART2AC(smart=NULL)
smart |
A character vector of SMART ID or NULL (default) |
If smart
is a vector of SMART ID, pfamSMART2AC will
return a list of associated Accession number for the given smart
. If
smart
is NULL, pfamSMART2AC(smart=NULL) (or pfamSMART2AC())
will return a list of associated Accession number for all the SMART ID in
the database.
Extra information: None
More Details: SMART (a Simple Modular Architecture Research Tool, http://smart.embl-heidelberg.de/) allows the identification and annotation of genetically mobile domains and the analysis of domain architectures. Reference: (1) Schultz et al. (1998) Proc. Natl. Acad. Sci. USA 95, 5857-5864. (2) Letunic et al. (2004) Nucleic Acids Res 32, D142-D144
A list of Accession number.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: SMART2AC <- pfamSMART2AC() head(SMART2AC) pfamSMART2AC(smart=sample(names(SMART2AC), 3)) ## End(Not run)