pfamHOMSTRAD2AC {PFAM} | R Documentation |
Mapping function from HOMSTRAD ID (HOMSTRAD) to the associated Accession number (AC)
pfamHOMSTRAD2AC(homstrad=NULL)
homstrad |
A character vector of HOMSTRAD ID or NULL (default) |
If homstrad
is a vector of HOMSTRAD ID, pfamHOMSTRAD2AC will
return a list of associated Accession number for the given homstrad
. If
homstrad
is NULL, pfamHOMSTRAD2AC(homstrad=NULL) (or pfamHOMSTRAD2AC())
will return a list of associated Accession number for all the HOMSTRAD ID in
the database.
Extra information: None
More Details: HOMSTRAD (HOMologous STRucture Alignment Database, http://www-cryst.bioc.cam.ac.uk/homstrad/) is a curated database of structure-based alignments for homologous protein families. Reference: Mizuguchi K, Deane CM, Blundell TL, Overington JP. (1998) HOMSTRAD: a database of protein structure alignments for homologous families. Protein Science 7:2469-2471.
A list of Accession number.
Ting-Yuan Liu
http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt
## Not run: HOMSTRAD2AC <- pfamHOMSTRAD2AC() head(HOMSTRAD2AC) pfamHOMSTRAD2AC(homstrad=sample(names(HOMSTRAD2AC), 3)) ## End(Not run)