pfamINTERPRO2AC {PFAM}R Documentation

Mappings from INTERPRO ID to Accession number

Description

Mapping function from INTERPRO ID (INTERPRO) to the associated Accession number (AC)

Usage

pfamINTERPRO2AC(interpro=NULL)

Arguments

interpro A character vector of INTERPRO ID or NULL (default)

Details

If interpro is a vector of INTERPRO ID, pfamINTERPRO2AC will return a list of associated Accession number for the given interpro. If interpro is NULL, pfamINTERPRO2AC(interpro=NULL) (or pfamINTERPRO2AC()) will return a list of associated Accession number for all the INTERPRO ID in the database. Extra information: None More Details: http://www.ebi.ac.uk/interpro/

Value

A list of Accession number.

Author(s)

Ting-Yuan Liu

References

http://www.sanger.ac.uk/Software/Pfam/ and ftp://ftp.sanger.ac.uk/pub/databases/Pfam/current_release/userman.txt

Examples

## Not run: 
    INTERPRO2AC <- pfamINTERPRO2AC()
    head(INTERPRO2AC)
    pfamINTERPRO2AC(interpro=sample(names(INTERPRO2AC), 3))
## End(Not run)

[Package PFAM version 1.14.1 Index]