GOTERM {GO} | R Documentation |
This data set gives mappings between GO identifiers and their respective terms.
Each GO identifier is mapped to a GOTerms
object that has 6 slots:
All the obsolete GO terms are under the nodes "obsolete molecular function" (GO:0008369), "obsolete cellular component" (GO id GO:0008370), and "obsolete biological process" (GO:0008371). Each of these GO identifiers has a group of GO identifiers as their direct children with GO terms that were defined by GO but are deprecated in the current build. These deprecated GO terms were appended by "(obsolete)" when the data package was built.
Mappings were based on data provided by:
Gene Ontology:http://gopher5/compbio/annotationSourceData/archive.godatabase.org/latest/. Built: 08-Aug-2006
Package built: Tue Sep 5 18:42:30 2006
http://www.ncbi.nlm.nih.gov/entrez/query.fcgi?db=gene
require("GO") || stop("GO unavailable") require("annotate") || stop("annotate unavailable") # Convert the environment object to a list xx <- as.list(GOTERM) if(length(xx) > 0){ # Get the TERMS for the first elent of xx GOID(xx[[1]]) Term(xx[[1]]) Synonym(xx[[1]]) Secondary(xx[[1]]) Definition(xx[[1]]) Ontology(xx[[1]]) }