assessSymmetry |
A function that calcualtes some directed degree statistics on graphs using a binomial error model |
bpMatrix |
This function generates the Bait-Prey Matrix for an protein-protein interaction (ppi) experiment |
calcInOutDegStats |
This function calculates the various degree statistic for a Protein-Protein Interaction (PPI) Graph |
estErrProbMethodOfMoments |
Estimate false positive and false negative error probabilities by method moments. |
genBPGraph |
A function to generate the protein-protein interaction (ppi) induced (un)directed graph |
idHomodimers |
A function to determine viable baits, viable preys, or homodimers within experimental data-sets. |
idStochastic |
A function to identify those proteins affected by either stochastic or systematic errors |
idSystematic |
A function to identify those proteins affected by either stochastic or systematic errors |
idViableProteins |
A function to determine viable baits, viable preys, or homodimers within experimental data-sets. |
nullDistDoublyTestedEdges |
Null distribution of number of reciprocated, unreciprocated and missing edges in stochastic model. |