exportFASTA {biomaRt}R Documentation

Exports getSequence results to FASTA format

Description

Exports getSequence results to FASTA format

Usage

exportFASTA(martTable, file)

Arguments

martTable A martTable that was the output of the getSequence function
file File to which you want to write the data

Author(s)

Steffen Durinck, http://www.esat.kuleuven.ac.be/~sdurinck

Examples


if(interactive()){
mart <- useMart("ensembl")

#seq<-getSequence(chromosome=c(2,2),start=c(100000,30000),end=c(100300,30500),species="hsapiens",mart=mart)
#exportFASTA(seq,file="test.fasta")

martDisconnect(mart = mart)
}

[Package biomaRt version 1.8.2 Index]