BeadLevelList-class {beadarray} | R Documentation |
A simple list-based class for storing red and green channel foreground and background intensities for an Illumina experiment.
Objects can be created by calls of the form new("BeadLevelList", G, Gb, x, y, ProbeID, targets)
, but are usually created by readBeadLevelData
.
BeadLevelList
objects can be created by new("BeadLevelList",BLData)
where BLData
is a list.
Objects of this class contains no slots (other than .Data
), but objects should contain the following list components:
R : | numeric matrix containing the red (foreground intensities. Rows correspond to spots and columns to arrays. |
G : | numeric matrix containing the green foreground intensities |
Rb : | numeric matrix containing the red background intensities |
Gb : | numeric matrix containing the green background intensities |
signature(.Object = "BeadLevelList")
ExpressionSetIlluminaObject
imageplot(BeadLevelList)
BeadLevelList
findAllOutliers(BeadLevelList)
Mark Dunning