BStringViews-constructors {Biostrings}R Documentation

Constructor-like functions and generics for BStringViews objects

Description

[TODO: Put a description here]

Usage

  views(subject, first=NA, last=NA)
  adjacentViews(subject, width, gapwidth=0)
  BStringViews(src, subjectClass, sep="")

Arguments

subject [TODO]
first [TODO]
last [TODO]
width [TODO]
gapwidth [TODO]
src [TODO]
subjectClass [TODO]
sep [TODO]

Details

In the code snippets below, subject is a character vector or a BString (or DNAString or RNAString) object and first, last and width are numeric vectors.

views(subject, first, last): [TODO: Document me]
adjacentViews(subject, width, gapwidth): [TODO: Document me]

In the code snippets below, src can be a character vector, a connection object, a BString (or DNAString or RNAString) object or a BStringViews object, subjectClass is a character-string with value "BString", "DNAString" or "RNAString" and sep is a character-string.

BStringViews(src, subjectClass, sep): [TODO: Document me]

Author(s)

H. Pages

See Also

BStringViews-class, BString, DNAString, RNAString

Examples

  ## A BStringViews object with 12 views
  v12 <- views(DNAString("TAATAATG"), -2:9, 0:11)

[Package Biostrings version 2.2.1 Index]