hu35ksubcPATH {hu35ksubc} | R Documentation |
KEGG (Kyoto Encyclopedia of Genes and Genomes) maintains pathway data for various organisms. hu35ksubcPATH maps probe identifiers to the identifiers used by KEGG for pathways in which the genes represented by the probe identifiers are involved
Each KEGG pathway has a name and id. Pathway name for a given pathway id can be obtained using the KEGG data package that can either be built using AnnBuilder or downloaded from Bioconductor http://www.bioconductor.org.
Graphic presentations of pathways are searchable at url{http://www.genome.ad.jp/kegg/pathway.html} by using pathway ids as keys.
Mappings were based on data provided by:
KEGG:ftp://ftp.genome.ad.jp/pub/kegg/tarfiles/pathway.tar.gz. Built: Release 37.0, January 4, 2006
Entrez Gene:ftp://ftp.ncbi.nlm.nih.gov/gene/DATA/. Built: Source data downloaded from Entrez Gene on Sun Mar 26 03:41:51 2006
Package built Sun Mar 26 03:56:42 2006
# Convert the environment to a list xx <- as.list(hu35ksubcPATH) # Remove probe ids that do not map to any pathway id xx <- xx[!is.na(xx)] if(length(xx) > 0){ # The pathway ids for the first two elements of XX xx[1:2] # Get the first one xx[[1]] }