hgug4100aPFAM           package:hgug4100a           R Documentation

_M_a_p _M_a_n_u_f_a_c_t_u_r_e_r _I_D_s _t_o _P_f_a_m _I_D_s

_D_e_s_c_r_i_p_t_i_o_n:

     hgug4100aPFAM is an R environment that provides mappings between a
     manufacturer id and the associated Pfam ids.

_D_e_t_a_i_l_s:

     Each manufacturer id maps to a named vector of Pfam ids.  The name
     for each Pfam id is the IPI accession numbe where this Pfam id is
     found.

     If the Pfam is a named NA, it means that the associated Entrez
     Gene id of this manufacturer id is found in an IPI entry of the
     IPI database, but there is no Pfam id in the entry.

     If the Pfam is a non-named NA, it means that the associated Entrez
     Gene id of this manufacturer id is not found in any IPI entry of
     the IPI database.

_R_e_f_e_r_e_n_c_e_s:

     Kersey P. J., Duarte J., Williams A., Karavidopoulou Y., Birney
     E., Apweiler R. The International Protein Index: An integrated
     database for proteomics experiments. Proteomics 4(7): 1985-1988
     (2004) <URL: http://www.ebi.ac.uk/IPI/IPIhelp.html>

_E_x_a_m_p_l_e_s:

             # Convert to a list
             xxx <- as.list(hgug4100aPFAM)
             # randomly display 10 probes
             sample(xxx, 10)

