ath1121501PATH2PROBE {ath1121501} | R Documentation |
ath1121501PATH2PROBE is an R environment that provides mappings between KEGG ids and manufacturer ids.
Each KEGG id is mapped to a named vector of manufacturer ids. The name
represents the KEGG id and the vector contains all manufacturer ids
that are found in that particular pathway. An NA
is reported
for any KEGG id that cannot be mapped to any manufacturer ids.
Pathway name for a given pathway id can be obtained using the KEGG data package that can either be built using AnnBuilder or downloaded from Bioconductor http://www.bioconductor.org.
Graphic presentations of pathways are searchable at http://www.genome.ad.jp/kegg/pathway.html using pathway ids as keys.
Mappings were based on data provided by:
Tair: ftp://ftp.arabidopsis.org/home/tair/Pathways/aracyc_dump_20060214 Built: N/A
Tair: ftp://ftp.arabidopsis.org/home/tair/Genes/gene_aliases.20051208 Tair: ftp://ftp.arabidopsis.org/home/tair/Genes/TAIR_sequenced_genes Tair: ftp://ftp.arabidopsis.org/home/tair/Ontologies/Plant_Ontology/stru-060309.txt Built: N/A
Package built Tue Jun 13 12:55:18 2006
# Convert the environment to a list xx <- as.list(ath1121501PATH2PROBE) # Remove pathway ids that do not map to any probe id xx <- xx[!is.na(xx)] if(length(xx) > 0){ # The probe ids for the first two elements of XX xx[1:2] # Get the first one xx[[1]] }