YEASTGO {YEAST} | R Documentation |
YEASTGO is an R environment that provides mappings between manufacturer ids and GO ids.
Each manufacturer id is mapped to a named vector of GO ids. The name associated with each GO id corresponds to the evidence code for that GO id. Evidence codes currently in use include:
IMP: inferred from mutant phenotype
IGI: inferred from genetic interaction
IPI: inferred from physical interaction
ISS: inferred from sequence similarity
IDA: inferred from direct assay
IEP: inferred from expression pattern
IEA: inferred from electronic annotation
TAS: traceable author statement
NAS: non-traceable author statement
ND: no biological data available
IC: inferred by curator
Mappings between probe ids and GO information were obtained through their mappings to Entrez Gene ids. NAs are assigned to probe identifiers that can not be mapped to any Gene Ontology information. Mappings between Gene Ontology ids an Gene Ontology terms and other information are available in a separate data package named GO.
Mappings were based on data provided by:
Yeast Genome: Not available
Gene Ontology: Not available
Package built Sat Mar 25 22:20:11 2006
# Convert to a list xx <- as.list(YEASTGO) # Remove all the NAs xx <- xx[!is.na(xx)] if(length(xx) > 0){ # Try the firest one got <- xx[[1]] got[[1]][["GOID"]] got[[1]][["Ontology"]] got[[1]][["Evidence"]] }