aqmobj.box-class {arrayQualityMetrics}R Documentation

Class to contain data generated from aqm.boxplot.

Description

Class to contain data generated from aqm.boxplot.

Details

See the aqm.prepdata help or the aqm Vignette for example of this object.

Slots

plot:
An object of class trellis.object if one channel arrays and a list of trellis.object if several channels arrays.
type:
A character string with a name for the section the plot belongs to in the report.
title:
A character string with the title of the plot to be written in the report.
legend:
A character string with the legend of the plot to be written in the report.
scores:
A numeric for each array corresponding to the scores assessed from the plot.
outliers:
List or integer of the arrays that are outliers using boxplot.stats on the scores.
shape:
A character "square" or "rect" depending on the aspect ratio desired in the report.

Author(s)

Audrey Kauffmann <audrey@ebi.ac.uk>

See Also

aqm.boxplot, aqm.plot


[Package arrayQualityMetrics version 2.2.3 Index]