aqm.spatial {arrayQualityMetrics} | R Documentation |
aqm.spatial
performs representation of the spatial distribution
of the intensities on the arrays, outlier detection and formats the
output for aqm.plot
usage.
aqm.spatial(expressionset, dataprep, scale)
expressionset |
Same input as for the function
arrayQualityMetrics |
dataprep |
An object of class aqmobj.prepdata |
scale |
The spatial distribution can be represented on the rank of the intensities or on the logarithm scale. Possible options are thus 'Rank' and 'Log'. |
See the aqm.prepdata help or the aqm Vignette for example of this object.
An object of class aqmobj.spatial
.
Audrey Kauffmann <audrey@ebi.ac.uk>
aqm.prepdata
, aqmobj.prepdata
,
aqmobj.spatial