KEGGEdge-class {KEGGgraph} | R Documentation |
A class to represent 'relation' elements in KGML files and edge objects in a KEGG graph
Objects are normally created by parseRelation
function,
which is not intended to be called by user directly
entry1ID
:entry2ID
:type
:getType-methods
subtypeName
:subtypeValue
:signature(obj = "KEGGEdge")
: Get entryIDs
of the edge in the order specified by the direction of the edge signature(object = "KEGGEdge")
: Get the
relation type signature(object = "KEGGEdge")
: Get the names
of edges in the convention of Rgraphviz, 'node1~node2'signature(object = "KEGGEdge")
: Show method Jitao David Zhang mailto:j.zhang@dkfz.de
KGML Manual http://www.genome.jp/kegg/docs/xml/
mapfile<- system.file("extdata/map00260.xml", package="KEGGgraph") maptest <- parseKGML(mapfile) x <- edges(maptest)[[1]] class(x) ## examples to extract information from KEGGEdge getName(x) getEntryID(x) getType(x) getSubtype(x) subtype <- getSubtype(x)[[1]] getName(subtype)