parseKGML {KEGGgraph}R Documentation

KGML file parser

Description

The function parses KGML files according to the KGML XML documentation.

Usage

parseKGML(file)

Arguments

file Name of KGML file

Details

The function parses KGML file (depending on XML package).

Value

An object of KEGGPathway-class.

Author(s)

Jitao David Zhang mailto:j.zhang@dkfz.de

References

KGML Manual http://www.genome.jp/kegg/docs/xml/

See Also

parseEntry, parseRelation, parseReaction, KEGGPathway-class,

Examples

sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
kegg.pathway <- parseKGML(sfile)
kegg.pathway

[Package KEGGgraph version 1.1.0 Index]