kgmlFileName2PathwayName {KEGGgraph}R Documentation

Convert KGML file name to pathway name

Description

The function uses KEGG package and converts KGML file name into human readable pathway name.

Usage

kgmlFileName2PathwayName(filename)

Arguments

filename A KGML file name

Details

So far it only supports KGML files organized by species.

NOTE: there is issue of package loading sequence to use this function: the 'KEGG.db' must be loaded before 'KEGGgraph' to use it properly. Otherwise the mget returns error of 'KEGGPATHID2NAME' is not a environment. So far I don't where does this bug come from, so I commented out the examples.

Value

A character string of pathway name

Author(s)

Jitao David Zhang mailto:j.zhang@dkfz.de


[Package KEGGgraph version 1.1.0 Index]