KEGGPathwayInfo-class {KEGGgraph}R Documentation

Class "KEGGPathwayInfo"

Description

A class to represent information of a KEGG pathway

Objects from the Class

Objects can be created by calls of the function parsePathwayInfo.

Slots

name:
Object of class "character" Pathway name
org:
Object of class "character" Organism
number:
Object of class "character" Number
title:
Object of class "character" Title of the pathway
image:
Object of class "character" Image URL
link:
Object of class "character" URL Link

Methods

getTitle
signature(object = "KEGGPathwayInfo"): get title of the pathway
show
signature(object = "KEGGPathwayInfo"): show method

Author(s)

Jitao David Zhang mailto:j.zhang@dkfz.de

References

KGML Document Manual http://www.genome.jp/kegg/docs/xml/

Examples

sfile <- system.file("extdata/hsa04010.xml",package="KEGGgraph")
pathway <- parseKGML(sfile)
pi <- getPathwayInfo(pathway)

class(pi)

getTitle(pi)

[Package KEGGgraph version 1.1.0 Index]