spmCollection-class {KCsmart} | R Documentation |
Sample point matrix collection
Description
A sample point matrix collection resulting from a call to calcSpmCollection
Objects from the Class
Objects can not be created by the user directly but rather through calcSpmCollection.
Slots
annotation
:- The annotation (containing the chromosome and position on the chromosome) for the sample points in the 'data' slot
data
:- A matrix with the kernel smoothed estimates of all samples
cl
:- A class vector indicating which samples belong to which class
sampleDensity
:- The sample density used to calculate the sample point matrix. ie the distance between two points in the sample point matrix, measured in base pairs.
sigma
:- The sigma used for the kernel to calculate the sample point matrix.
mirrorLocs
:- The mirror locations list used to calculate the sample point matrix
Methods
- show
signature(object = "spmCollection")
: ...
Examples
showClass("spmCollection")
[Package
KCsmart version 2.3.2
Index]