GeneInfoScreen |
"CombinedRanking" |
GeneInfoScreen,CombinedRanking-method |
"CombinedRanking" |
GeneInfoScreen-methods |
"CombinedRanking" |
GeneRanking |
"GeneRanking" |
GeneRanking-class |
"GeneRanking" |
GenerateBootMatrix |
Altered datasets via bootstrap |
GenerateBootMatrix,ExpressionSet,character-method |
Altered datasets via bootstrap |
GenerateBootMatrix,matrix,factor-method |
Altered datasets via bootstrap |
GenerateBootMatrix,matrix,numeric-method |
Altered datasets via bootstrap |
GenerateBootMatrix-methods |
Altered datasets via bootstrap |
GenerateFoldMatrix |
Altered datasets via k-Jackknife or Label (class) exchange |
GenerateFoldMatrix,ExpressionSet,character-method |
Altered datasets via k-Jackknife or Label (class) exchange |
GenerateFoldMatrix,matrix,factor-method |
Altered datasets via k-Jackknife or Label (class) exchange |
GenerateFoldMatrix,matrix,numeric-method |
Altered datasets via k-Jackknife or Label (class) exchange |
GenerateFoldMatrix-methods |
Altered datasets via k-Jackknife or Label (class) exchange |
GeneSelector |
Exclude genes from being candidates for differential expression |
GeneSelector,list-method |
Exclude genes from being candidates for differential expression |
GeneSelector-methods |
Exclude genes from being candidates for differential expression |
GetAlpha |
Helper function for stability assessement. |
getLambda |
Internal functions |
GetRepeatRanking |
Repeat the ranking procedure for altered data sets |
GetRepeatRanking,GeneRanking,BootMatrix,missing,missing,missing-method |
Repeat rankings for altered dataset |
GetRepeatRanking,GeneRanking,FoldMatrix,ANY,missing,missing-method |
Repeat rankings for altered dataset |
GetRepeatRanking,GeneRanking,missing,missing,ANY,ANY-method |
Repeat rankings for altered dataset |
GetRepeatRanking-methods |
Repeat rankings for altered dataset |
GetStabilityGLM |
Stability measures for significance findings |
GetStabilityGLM,RepeatRanking-method |
Stability measures for significance findings |
GetStabilityGLM-methods |
Stability measures for significance findings |
GetStabilityLm |
Stability measures for gene rankings |
GetStabilityLm,RepeatRanking-method |
Stability measures for gene rankings |
GetStabilityLm-methods |
Stability measures for gene rankings |
GetStabilityOverlap |
Stability measures for gene rankings |
GetStabilityOverlap,RepeatRanking-method |
Stability measures for gene rankings |
GetStabilityOverlap-methods |
Stability measures for gene rankings |
GetStabilityPCA |
Stability measures for gene rankings |
GetStabilityPCA,RepeatRanking-method |
Stability measures for gene rankings |
GetStabilityPCA-methods |
Stability measures for gene rankings |
RankingBaldiLong |
Ranking based on the t-statistic of Baldi and Long |
RankingBaldiLong,ExpressionSet,character-method |
Ranking based on the t-statistic of Baldi and Long |
RankingBaldiLong,matrix,factor-method |
Ranking based on the t-statistic of Baldi and Long |
RankingBaldiLong,matrix,numeric-method |
Ranking based on the t-statistic of Baldi and Long |
RankingBaldiLong-methods |
Ranking based on the t-statistic of Baldi and Long |
RankingBstat |
Ranking based on the B-statistic |
RankingBstat,ExpressionSet,character-method |
Ranking based on the B-statistic. |
RankingBstat,matrix,factor-method |
Ranking based on the B-statistic. |
RankingBstat,matrix,numeric-method |
Ranking based on the B-statistic. |
RankingBstat-methods |
Ranking based on the B-statistic. |
RankingEbam |
Ranking based on the empirical bayes approach of Efron |
RankingEbam,ExpressionSet,character-method |
Ranking based on the empirical bayes approach of Efron |
RankingEbam,matrix,factor-method |
Ranking based on the empirical bayes approach of Efron |
RankingEbam,matrix,numeric-method |
Ranking based on the empirical bayes approach of Efron |
RankingEbam-methods |
Ranking based on the empirical bayes approach of Efron |
RankingFC |
Ranking based on the (log) foldchange |
RankingFC,ExpressionSet,character-method |
Ranking based on the (log) foldchange |
RankingFC,matrix,factor-method |
Ranking based on the (log) foldchange |
RankingFC,matrix,numeric-method |
Ranking based on the (log) foldchange |
RankingFC-methods |
Ranking based on the (log) foldchange |
RankingFoxDimmic |
Ranking based on the t-statistic of Fox and Dimmic |
RankingFoxDimmic,ExpressionSet,character-method |
Ranking based on the t-statistic of Fox and Dimmic |
RankingFoxDimmic,matrix,factor-method |
Ranking based on the t-statistic of Fox and Dimmic |
RankingFoxDimmic,matrix,numeric-method |
Ranking based on the t-statistic of Fox and Dimmic |
RankingFoxDimmic-methods |
Ranking based on the t-statistic of Fox and Dimmic |
RankingGap |
Ranking based on 'gaps' |
RankingGap,ExpressionSet,character-method |
Ranking based on 'gaps'. |
RankingGap,matrix,factor-method |
Ranking based on 'gaps'. |
RankingGap,matrix,numeric-method |
Ranking based on 'gaps'. |
RankingGap-methods |
Ranking based on 'gaps'. |
RankingLimma |
Ranking based on the 'moderated' t statistic |
RankingLimma,ExpressionSet,character-method |
Ranking based on the 'moderated' t statistic |
RankingLimma,matrix,factor-method |
Ranking based on the 'moderated' t statistic |
RankingLimma,matrix,numeric-method |
Ranking based on the 'moderated' t statistic |
RankingLimma-methods |
Ranking based on the 'moderated' t statistic |
RankingPermutation |
Ranking based on permutation tests. |
RankingPermutation,ExpressionSet,character-method |
Ranking based on permutation tests. |
RankingPermutation,matrix,factor-method |
Ranking based on permutation tests. |
RankingPermutation,matrix,numeric-method |
Ranking based on permutation tests. |
RankingPermutation-methods |
Ranking based on permutation tests. |
RankingSam |
Ranking based on the SAM statistic |
RankingSam,ExpressionSet,character-method |
Ranking based on the SAM statistic |
RankingSam,matrix,factor-method |
Ranking based on the SAM statistic |
RankingSam,matrix,numeric-method |
Ranking based on the SAM statistic |
RankingSam-methods |
Ranking based on the SAM statistic |
RankingShrinkageT |
Ranking based on the 'shrinkage t' statistic |
RankingShrinkageT,ExpressionSet,character-method |
Ranking based on the 'shrinkage t' statistic |
RankingShrinkageT,matrix,factor-method |
Ranking based on the 'shrinkage t' statistic |
RankingShrinkageT,matrix,numeric-method |
Ranking based on the 'shrinkage t' statistic |
RankingShrinkageT-methods |
Ranking based on the 'shrinkage t' statistic |
RankingSoftthresholdT |
Ranking via the 'soft-threshold' t-statistic |
RankingSoftthresholdT,ExpressionSet,character-method |
Ranking via the 'soft-threshold' t-statistic |
RankingSoftthresholdT,matrix,factor-method |
Ranking via the 'soft-threshold' t-statistic |
RankingSoftthresholdT,matrix,numeric-method |
Ranking via the 'soft-threshold' t-statistic |
RankingSoftthresholdT-methods |
Ranking via the 'soft-threshold' t-statistic |
RankingTstat |
Ranking based on the 'ordinary' t statistic. |
RankingTstat,ExpressionSet,character-method |
Ranking with the ordinary t statistic |
RankingTstat,matrix,factor-method |
Ranking with the ordinary t statistic |
RankingTstat,matrix,numeric-method |
Ranking with the ordinary t statistic |
RankingTstat-methods |
Ranking with the ordinary t statistic |
RankingWelchT |
Ranking based on the Welch t statistic. |
RankingWelchT,ExpressionSet,character-method |
Ranking based on the Welch t statistic. |
RankingWelchT,matrix,factor-method |
Ranking based on the Welch t statistic. |
RankingWelchT,matrix,numeric-method |
Ranking based on the Welch t statistic. |
RankingWelchT-methods |
Ranking based on the Welch t statistic. |
RankingWilcEbam |
Ranking based on the empirical bayes approach of Efron |
RankingWilcEbam,ExpressionSet,character-method |
Ranking based on the empirical bayes approach of Efron |
RankingWilcEbam,matrix,factor-method |
Ranking based on the empirical bayes approach of Efron |
RankingWilcEbam,matrix,numeric-method |
Ranking based on the empirical bayes approach of Efron |
RankingWilcEbam-methods |
Ranking based on the empirical bayes approach of Efron |
RankingWilcoxon |
Ranking based on the Wilcoxon statistic |
RankingWilcoxon,ExpressionSet,character-method |
Ranking based on the Wilcoxon statistic |
RankingWilcoxon,matrix,factor-method |
Ranking based on the Wilcoxon statistic |
RankingWilcoxon,matrix,numeric-method |
Ranking based on the Wilcoxon statistic |
RankingWilcoxon-methods |
Ranking based on the Wilcoxon statistic |
RecoveryScore |
Stability measures for gene rankings |
RepeatRanking |
"RepeatRanking" |
RepeatRanking-class |
"RepeatRanking" |