StabilityOverlap-class {GeneSelector}R Documentation

"StabilityOverlap"

Description

An object returned from a call to GetStabilityOverlap.

Slots

overlap:
A matrix of overlap counts. The rows correspond to the position in the list (ranks), columns to different perturbed datasets/replications.
scores:
A matrix of scores. The rows correspond to the position in the list (ranks), columns to different perturbed datasets/replications.
weightscheme:
A list that gives information about the weighting scheme used, s. GetStabilityOverlap

Methods

show
Use show(object) for brief information.
summary
Use summary(object) for summarized information, s. summary,StabilityOverlap
plot
Use plot for a graphical display, s. plot,StabilityOverlap

Author(s)

Martin Slawski martin.slawski@campus.lmu.de
Anne-Laure Boulesteix http://www.slcmsr.net/boulesteix

References

Lottaz, C., Yang, X., Scheid, S., Spang, R. (2006)
OrderedList - a Bioconductor package for detecting similarity in ordered gene lists. Bioinformatics, 22, 2315-2316


[Package GeneSelector version 1.2.0 Index]