infrastructure for genetics of gene expression (c) 2008 VJ Carey


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Documentation for package ‘GGBase’ version 2.0.4

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chrnum Class "genesym" and other casting classes
chrnum,numeric-method Class "genesym" and other casting classes
chrnum-class Class "genesym" and other casting classes
cnumOrMissing Class "genesym" and other casting classes
cnumOrMissing-class Class "genesym" and other casting classes
cwSnpScreenResult-class Class "gwSnpScreenResult" - container for GGtools gwSnpScreen method outputs and allied objects
exFeatID Class "genesym" and other casting classes
exFeatID-class Class "genesym" and other casting classes
genesym Class "genesym" and other casting classes
genesym-class Class "genesym" and other casting classes
GGfitter-class Class "GGfitter" legacy container for fast fitting of eQTL search models - obsolete, see gwSnpScreen for more current approaches
gwSnpScreenResult-class Class "gwSnpScreenResult" - container for GGtools gwSnpScreen method outputs and allied objects
hmceuAmbB36_23a_dbconn SQLite infrastructure for SNP locations
hmceuAmbB36_23a_dbfile SQLite infrastructure for SNP locations
initialize,racExSet-method Class "racExSet" - container for genotype data in 'rare allele count' form and expression data. Approaching obsolescence, see smlSet for more efficient representation.
multiGwSnpScreenResult-class Class "gwSnpScreenResult" - container for GGtools gwSnpScreen method outputs and allied objects
oGtypeExSet-class Class "oGtypeExSet" oligo-based genotyping output + expression set container - obsolete
racExSet-class Class "racExSet" - container for genotype data in 'rare allele count' form and expression data. Approaching obsolescence, see smlSet for more efficient representation.
rsNum Class "genesym" and other casting classes
rsNum,character-method Class "genesym" and other casting classes
rsNum-class Class "genesym" and other casting classes
show,snpLocNCref-method Class "genesym" and other casting classes
smlEnv Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes
smlEnv,smlSet-method Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes
smList Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes
smList,smlSet-method Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes
smlSet-class Documentation on S4 class "smlSet" an eSet-derived container for snpMatrix lists, allowing efficient combination of SNP chip genotyping with microarray expression data, and allied classes
snpID Class "genesym" and other casting classes
snpID-class Class "genesym" and other casting classes
snpLocNCref Class "genesym" and other casting classes
snpLocNCref-class Class "genesym" and other casting classes
snpMeta-class Class "snpMeta" representing SNP locations etc., obsolete for humans, still used for murine data.
snpMetaWhole-class Class "snpMeta" representing SNP locations etc., obsolete for humans, still used for murine data.
snpScreenResult-class Class "snpScreenResult" - container approaching obsolescence, retained for legacy purposes, that holds expression vs genotype analysis results; see gwSnpScreenResult for more current approach.
twSnpScreenResult-class Class "snpScreenResult" - container approaching obsolescence, retained for legacy purposes, that holds expression vs genotype analysis results; see gwSnpScreenResult for more current approach.