snpScreenResult-class {GGBase}R Documentation

Class "snpScreenResult" – container approaching obsolescence, retained for legacy purposes, that holds expression vs genotype analysis results; see gwSnpScreenResult for more current approach.

Description

Class "snpScreenResult" – container approaching obsolescence, retained for legacy purposes, that holds expression vs genotype analysis results; see gwSnpScreenResult for more current approach.

Objects from the Class

Objects can be created by calls of the form new("snpScreenResult", ...).

Slots

.Data:
Object of class "list" list of inference tables
call:
Object of class "call" audit information
gene:
Object of class "character" gene name
locs:
Object of class "numeric" locations of SNPs
chr:
Object of class "character" chromosome in play
fitter:
Object of class "ANY" audit information
annotation:
Object of class "character" propagated from expression data

Extends

Class "list", from data part. Class "vector", by class "list", distance 2. Class "AssayData", by class "list", distance 2.

Methods

No methods defined with class "snpScreenResult" in the signature in GGBase, but see GGtools.

Note

twSnpScreenResult is provided for multiple gene analyses. See multiGwSnpScreenResult for the more current approach to such analyses

Author(s)

VJ Carey <stvjc@channing.harvard.edu>

Examples

showClass("snpScreenResult")

[Package GGBase version 2.0.4 Index]