racExSet-class {GGBase} | R Documentation |
Class "racExSet" – container for genotype data in 'rare allele count' form and expression data. Approaching obsolescence, see smlSet for more efficient representation.
Objects can be created by calls of the form new("racExSet", phenoData, experimentData, annotation, exprs, racs, rarebase, SNPalleles)
.
racAssays
:"AssayData"
S x N
matrix holding rare allele counts rarebase
:"character"
nucleotide
code for rare allele of each SNP in the population assayed SNPalleles
:"character"
nucleotide code for polymorphism assayData
:"AssayData"
expression
data container phenoData
:"AnnotatedDataFrame"
sample data container featureData
:"AnnotatedDataFrame"
expression feature metadata container experimentData
:"MIAME"
experiment
level metadata annotation
:"character"
Bioconductor
annotation package name .__classVersion__
:"Versions"
class
version metadata
Class "eSet"
, directly.
Class "VersionedBiobase"
, by class "eSet", distance 2.
Class "Versioned"
, by class "eSet", distance 3.
signature(.Object = "racExSet")
: ... VJ Carey <stvjc@channing.harvard.edu>
murine examples in GGtools continue to use this structure
showClass("racExSet")