hmceuAmbB36_23a_dbconn {GGBase} | R Documentation |
SQLite infrastructure for SNP locations
hmceuAmbB36_23a_dbconn() hmceuAmbB36_23a_dbfile()
hmceuAmbB36 23a refers to HapMap CEU Ambiguous IUPAC symbols denoting SNP for hapmap build 36 version 23a.
Follows conventions of SQLite annotation package RDBMS referencing: the dbconn() function call above evaluates to a SQLiteConnection instance; the dbfile() call evaluates to a string giving the location of the SQLite file holding the location table.
See details.
Vince Carey <stvjc@channing.harvard.edu>
hmceuAmbB36_23a_dbfile() con = hmceuAmbB36_23a_dbconn() tab = dbListTables(con) dbGetQuery(hmceuAmbB36_23a_dbconn() , paste("select * from", tab, " limit 5"))