gwSnpScreenResult-class {GGBase} | R Documentation |
Class "gwSnpScreenResult" – container for GGtools gwSnpScreen method outputs and allied objects
Objects can be created by calls of the form new("gwSnpScreenResult", ...)
.
These will be primarily lists of inference tables (snps are rows,
columns are statistics and p-values). Additional slots
manage analysis metadata.
gwSnpScreenResult is intended for genome-wide analysis of expression for a single gene.
cwSnpScreenResult is intended for the restriction to a single chromosome.
multiGwSnpScreenResult is intended for analyses with multiple genes.
.Data
:"list"
containing
inference tables (snps are rows, columns are statistics and
p-values) gene
:"character"
typically
the HUGO symbol of the gene analyzed psid
:"character"
the
feature identifier of the associated microarray annotation
:"character"
vector
of relevant annotation package identifier names snpLocPackage
:"character"
name
of package holding the netCDF store of SNP locations snpLocExtRef
:"character"
name
of object in snpLocPackage pointing to the external store (SQLite) activeSnpInds
:"numeric"
vector
telling which SNPs (relative to the referenced netCDF locations store)
were used
Class "list"
, from data part.
Class "vector"
, by class "list", distance 2.
Class "AssayData"
, by class "list", distance 2.
No methods defined with class "gwSnpScreenResult" in the signature in class GGBase. See GGtools gwSnpScreen documentation.
VJ Carey <stvjc@channing.harvard.edu>
showClass("gwSnpScreenResult") showClass("cwSnpScreenResult")