Protein-Protein Interaction Statistical Package


[Package List] [Top]

Documentation for package `ppiStats' version 1.0.0

User Guides and Package Vignettes

Read overview or browse directory.

Help Pages

assessSymmetry A function that calcualtes some directed degree statistics on graphs using a binomial error model
bpMatrix This function generates the Bait-Prey Matrix for an protein-protein interaction (ppi) experiment
calcInOutDegStats This function calculates the various degree statistic for a Protein-Protein Interaction (PPI) Graph
estErrProbMethodOfMoments Estimate false positive and false negative error probabilities by method moments.
genBPGraph A function to generate the protein-protein interaction (ppi) induced (un)directed graph
idHomodimers A function to determine viable baits, viable preys, or homodimers within experimental data-sets.
idStochastic A function to identify those proteins affected by either stochastic or systematic errors
idSystematic A function to identify those proteins affected by either stochastic or systematic errors
idViableProteins A function to determine viable baits, viable preys, or homodimers within experimental data-sets.
nullDistDoublyTestedEdges Null distribution of number of reciprocated, unreciprocated and missing edges in stochastic model.