idProteinType {ppiStats} | R Documentation |
These functions take a bait to prey directed graphNEL and returns either a character vector of all proteins which participates in homodimer relationships or a list of two character vectors: a vector of viable baits as well as a vector of viable prey.
idViableProteins(bpGraph) idHomodimers(bpGraph)
bpGraph |
A direced graphNEL |
The return value for idHomodimers is a character vector of those
proteins which participates in homodimer relationships.
The return value for idViableProteins is a list of two character
vectors:
viableBaits |
A vector of baits that finds at least one prey in the experimental graphNEL, i.e. the nodes with out-degree at greater than 0 |
viablePrey |
A vector of prey which is found by at least one bait in the experimental graphNEL, i.e. the nodes with in-degree at greater than 0 |
T Chiang
library(ppiData) idViableProteins(Ito2001BPGraph) idHomodimers(Ito2001BPGraph)