getINTERPRO {biomaRt} | R Documentation |
This function retrieves INTERPRO protein domain information using Ensembl and UNIPROT (http://www.ebi.ac.uk/uniprot) given a gene identifier
getINTERPRO( id, type, array, mart)
id |
gene identifier |
type |
type of identifier, value should be either affy, entrezgene, embl, hugo, ensembl or refseq |
array |
array identifier only to be used if gene identifiers are from affy arrays. An overview of the accepted identifiers can be obtained with the function: getAffyArrays() |
mart |
object of class Mart, containing connections to the BioMart databases. You can create such an object using the function useMart. |
Steffen Durinck, http://www.esat.kuleuven.ac.be/~sdurinck
if(interactive()){ mart = useMart(biomart = "ensembl", dataset = "hsapiens_gene_ensembl") #example using affy id interpro = getINTERPRO( id = "1939_at", array = "affy_hg_u95av2", mart = mart) show(interpro) #example using locuslink id interpro = getINTERPRO( id = 672, type = "entrezgene", mart = mart) show(interpro) }