cleanBM | Clear getBM result from duplicates |
exportFASTA | Exports getSequence results to FASTA format |
getAffyArrays | Displays affy identifiers of Affymetrix chips supported by the Ensembl package |
getBM | Retrieves information from the BioMart database |
getFeature | Retrieves Feature starting from a gene symbol and array identifier |
getGene | Retrieves Gene information |
getGO | Retrieves GO information |
getHomolog | Get homologs |
getINTERPRO | Retrieves INTERPRO protein domain information |
getOMIM | Retrieves OMIM information |
getPossibleXrefs | Get possible cross-references in Ensembl |
getSequence | Retrieves sequences |
getSNP | Retrieves SNP's between a given chromosome start and end position |
getXref | Get cross reference in Ensembl |
listAttributes | lists the attributes available in the selected dataset |
listDatasets | lists the datasets available in the selected BioMart database |
listFilters | lists the filters available in the selected dataset |
listMarts | list the BioMart database covered by biomaRt package |
Mart-class | Class Mart |
martDisconnect | Disconnects from BioMarts |
martTable-class | Class martTable |
parseAttributes | parse attributes |
parseFilters | parse filters |
useDataset | Select a dataset to use and updates Mart object |
useMart | Connects to the selected BioMart |