Codelink-class {codelink}R Documentation

Class Codelink

Description

This is the storage class for Codelink data

Objects from the Class

Object are created after reading text codelink files with read.Codelink()

Slots

Sample\_name:
Object of class "character" containing the probeset ID
pm:
Object of class "matrix" containing the PM intensities. Columns represent samples and rows the different probes.
mm:
Object of class "matrix" containing the MM intensities

Methods

colnames
signature(x = "ProbeSet"): the column names of the pm matrices which are the sample names
express.summary.stat
signature(x = "ProbeSet", pmcorrect = "character", summary = "character"): applies a summary statistic to the probe set.
sampleNames
signature(object = "ProbeSet"): the column names of the pm matrices which are the sample names

Note

More details are cotained in the vignette

See Also

Examples

#data(codelink.example)

[Package codelink version 1.0.0 Index]