plateCore-package |
plateCore: A Bioconductor package for high throughput analysis of flow cytometry data |
%on% |
Methods for Function %on% in Package 'plateCore' |
%on%,ANY,flowPlate-method |
Methods for Function %on% in Package 'plateCore' |
%on%-methods |
Methods for Function %on% in Package 'plateCore' |
applyControlGates |
Apply control gates to a flowPlate |
applyControlGates,flowPlate-method |
Apply control gates to a flowPlate |
applyControlGates-methods |
Apply control gates to a flowPlate |
compensate |
Compensate a flowPlate to correct for the effects of spillover. |
compensate,flowPlate,ANY-method |
Compensate a flowPlate to correct for the effects of spillover. |
compensate-method |
Compensate a flowPlate to correct for the effects of spillover. |
compensationSet |
Sample Compensation Data Set |
densityplot |
One-dimensional density plots for flowPlates |
densityplot,formula,flowPlate,ANY,ANY,ANY,missing-method |
One-dimensional density plots for flowPlates |
densityplot,formula,flowPlate-method |
One-dimensional density plots for flowPlates |
densityplot-method |
One-dimensional density plots for flowPlates |
fixAutoFl |
Correct for the effects of cell size (FSC) on autofluorescence |
fixAutoFl,flowPlate-method |
Correct for the effects of cell size (FSC) on autofluorescence |
fixAutoFl-method |
Correct for the effects of cell size (FSC) on autofluorescence |
flowPlate |
Create a flowPlate |
flowPlate,flowSet-method |
Create a flowPlate |
flowPlate-class |
The flowPlate class. |
flowPlate-method |
Create a flowPlate |
fpbind |
Merge multiple flowPlates into a single virtual flowPlate |
fpbind,flowPlate,flowPlate-method |
Merge multiple flowPlates into a single virtual flowPlate |
fpbind-method |
Merge multiple flowPlates into a single virtual flowPlate |
getGroups |
Retrieve Negative control groups from a flowPlate |
getGroups,flowPlate-method |
Retrieve Negative control groups from a flowPlate |
getGroups-method |
Retrieve Negative control groups from a flowPlate |
gutterPlot |
gutterPlot |
gutterPlot,flowPlate-method |
gutterPlot |
gutterPlot-method |
gutterPlot |
mfiPlot |
mfiPlot |
mfiPlot,flowPlate-method |
mfiPlot |
mfiPlot-method |
mfiPlot |
panel.densityplot.flowPlate |
Lattice-flowViz style panel function for flowPlate densityplot. |
panel.xyplot.flowPlate |
Lattice-flowViz style panel function for flowPlate xyplot. |
pbmcPlate |
pbmcPlate Data Set |
phenoData,flowPlate-method |
Create a flowPlate |
plateCore |
plateCore: A Bioconductor package for high throughput analysis of flow cytometry data |
plateSet |
Get the flowSet from a flowPlate object |
plateSet,flowPlate-method |
Get the flowSet from a flowPlate object |
plateSet-method |
Get the flowSet from a flowPlate object |
plotPlate |
plotPlate |
plotPlate,flowPlate-method |
plotPlate |
plotPlate-method |
plotPlate |
prepanel.densityplot.flowPlate |
Lattice-flowViz style panel function for flowPlate densityplot. |
prepanel.xyplot.flowPlate |
Lattice-flowViz style panel function for flowPlate xyplot. |
sampleNames,flowPlate-method |
Create a flowPlate |
setControlGates |
Create control gates for a flowPlate |
setControlGates,flowPlate-method |
Create control gates for a flowPlate |
setControlGates-method |
Create control gates for a flowPlate |
Subset |
Subset |
Subset,flowPlate,ANY-method |
Subset |
Subset,flowPlate-method |
Subset |
Subset-method |
Subset |
summaryStats |
Compute summary statistics on a flowPlate |
summaryStats,flowPlate-method |
Compute summary statistics on a flowPlate |
summaryStats-method |
Compute summary statistics on a flowPlate |
wellAnnotation |
Retrieve a data.frame describing the content of a flowPlate |
wellAnnotation,flowPlate-method |
Retrieve a data.frame describing the content of a flowPlate |
wellAnnotation-method |
Retrieve a data.frame describing the content of a flowPlate |
xyplot |
Scatter plots (dotplots) for flowPlates. |
xyplot,formula,flowPlate-method |
Scatter plots (dotplots) for flowPlates. |
xyplot-method |
Scatter plots (dotplots) for flowPlates. |
[,flowPlate,ANY-method |
The flowPlate class. |
[[,flowPlate,ANY-method |
The flowPlate class. |