graph: A package to handle graph data structures


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A B C D E F G H I J L M N R S T U V misc

-- A --

acc Methods for Accessibility Lists
acc,clusterGraph-method Class "clusterGraph"
acc,graph-method Class "graph"
acc-methods Methods for Accessibility Lists
addEdge addEdge
addEdge,character,character,graphNEL,numeric-method Class "graphNEL"
addNode addNode
addNode,character,graphNEL-method Class "graphNEL"
adj Methods for finding the adjacency list for selected nodes.
adj,clusterGraph-method Class "clusterGraph"
adj,distGraph-method Class "distGraph"
adj,graphNEL-method Class "graphNEL"
adj-methods Methods for finding the adjacency list for selected nodes.
aveNumEdges Calculate the average number of edges in a graph

-- B --

bNode Class "gEdge"
bNode,gEdge-method Class "gEdge"
boundary Returns the Boundary between a Graph and a SubGraph

-- C --

calcProb Calculate the hypergeometric probability of the subgraph's number of edges.
calcSumProb Calculate the probability that a subgraph has an unusual number of edges.
clearNode clearNode
clearNode,character,graphNEL-method Class "graphNEL"
clusterGraph-class Class "clusterGraph"
coerce Class "graphNEL"
coerce,generalGraph-method Class "generalGraph" ~~~
coerce,graphNEL,generalGraph-method Class "graphNEL"
combineNodes combineNodes
combineNodes,character,graphNEL,character-method Class "graphNEL"
complement Class "graph"
complement,graph-method Class "graph"
connComp Class "graph"
connComp,clusterGraph-method Class "clusterGraph"
connComp,graph-method Class "graph"
connection-class Methods for GXL manipulations in package graph
contents Class "hashtable" ~~~
contents,hashtable-method Class "hashtable" ~~~

-- D --

degree Class "graph"
degree,graph,ANY-method Class "graph"
degree,graph,missing-method Class "graph"
DFS Depth First Search
DFS,graph,character-method Depth First Search
dfs,graph-method Class "graph"
Dist Class "distGraph"
Dist,distGraph-method Class "distGraph"
distGraph-class Class "distGraph"
dumpGXL Methods for GXL manipulations in package graph
dumpGXL,connection-method Methods for GXL manipulations in package graph
dumpGXL-methods Methods for GXL manipulations in package graph
duplicatedEdges duplicatedEdges

-- E --

edgeID Class "gEdge"
edgeID,gEdge-method Class "gEdge"
edgeL Class "graphNEL"
edgeL,graphNEL-method Class "graphNEL"
edgeMatrix Compute an Edge Matrix for a Graph
edgeMatrix,clusterGraph-method Compute an Edge Matrix for a Graph
edgeMatrix,graphNEL-method Compute an Edge Matrix for a Graph
edgemode Class "graph"
edgemode,graph-method Class "graph"
edgemode<-,graph,character-method Class "graph"
edgeOrder Class "gNode"
edgeOrder,gNode-method Class "gNode"
edges Class "graphNEL"
edges,clusterGraph,character-method Class "clusterGraph"
edges,clusterGraph,missing-method Class "clusterGraph"
edges,distGraph,character-method Class "distGraph"
edges,distGraph,missing-method Class "distGraph"
edges,graphNEL,character-method Class "graphNEL"
edges,graphNEL,missing-method Class "graphNEL"
edgeWeights Class "graphNEL"
edgeWeights,clusterGraph-method Class "clusterGraph"
edgeWeights,graphNEL-method Class "graphNEL"
edgeWeightVector Compute an Edge Matrix for a Graph
eNode Class "gEdge"
eNode,gEdge-method Class "gEdge"

-- F --

file-class Methods for GXL manipulations in package graph
fromEdges Class "gNode"
fromEdges,gNode-method Class "gNode"
fromEdges<-,gNode-method Class "gNode"
fromGXL Methods for GXL manipulations in package graph
fromGXL,connection-method Methods for GXL manipulations in package graph
fromGXL-methods Methods for GXL manipulations in package graph

-- G --

gEdge-class Class "gEdge"
generalGraph-class Class "generalGraph" ~~~
gNode-class Class "gNode"
graph-class Class "graph"
graphExamples A List Of Example Graphs
graphID-class Unique Graph Identifications
graphNEL-class Class "graphNEL"
GXL Methods for GXL manipulations in package graph
gxlTreeNEL Methods for GXL manipulations in package graph

-- H --

hash Class "hashtable" ~~~
hash,ANY,ANY,hashtable-method Class "hashtable" ~~~
hashtable-class Class "hashtable" ~~~

-- I --

idenv Functions to associate identifiers with graph components.
inEdges inEdges
inEdges,character,graphNEL-method Class "graphNEL"
inEdges,missing,graphNEL-method Class "graphNEL"
initialize Class "graphNEL"
initialize,generalGraph-method Class "generalGraph" ~~~
initialize,graphNEL-method Class "graphNEL"
initialize,hashtable-method Class "hashtable" ~~~
intersection Class "graph"
intersection,graph,graph-method Class "graph"
isConnected Class "graph"
isConnected,graph-method Class "graph"

-- J --

join Class "graph"
join,graph,graph-method Class "graph"

-- L --

label Class "gNode"
label,gNode-method Class "gNode"

-- M --

mostEdges Find the node in a graph with the greatest number of edges

-- N --

NELhandler Methods for GXL manipulations in package graph
newID Functions to associate identifiers with graph components.
nodeID Class "gNode"
nodeID,gNode-method Class "gNode"
nodes Class "graphNEL"
nodes,clusterGraph-method Class "clusterGraph"
nodes,distGraph-method Class "distGraph"
nodes,graphNEL-method Class "graphNEL"
nodes<-,graphNEL,character-method Class "graphNEL"
nodeType Class "gNode"
nodeType,gNode-method Class "gNode"
nullgraphID Functions to associate identifiers with graph components.
numEdges Calculate the number of edges in a graph
numNodes Class "graph"
numNodes,clusterGraph-method Class "clusterGraph"
numNodes,distGraph-method Class "distGraph"
numNodes,graph-method Class "graph"
numNodes,graphNEL-method Class "graphNEL"
numNoEdges Calculate the number of nodes that have an edge list of NULL

-- R --

randomEGraph Random Edge Graph
randomGraph Random Graph
removeEdge removeEdge
removeEdge,character,character,graphNEL-method Class "graphNEL"
removeNode removeNode
removeNode,character,graphNEL-method Class "graphNEL"

-- S --

show Class "graphNEL"
show,clusterGraph-method Class "clusterGraph"
show,distGraph-method Class "distGraph"
show,graphNEL-method Class "graphNEL"
startids Functions to associate identifiers with graph components.
subGraph Class "graphNEL"
subGraph,character,clusterGraph-method Class "clusterGraph"
subGraph,character,graphNEL-method Class "graphNEL"

-- T --

threshold Class "distGraph"
threshold,distGraph-method Class "distGraph"
toEdges Class "gNode"
toEdges,gNode-method Class "gNode"
toEdges<-,gNode-method Class "gNode"
toGXL Methods for GXL manipulations in package graph
toGXL,graphNEL-method Class "graphNEL"
toGXL-methods Methods for GXL manipulations in package graph

-- U --

ugraph Underlying Graph
union Class "graph"
union,graph,graph-method Class "graph"

-- V --

validateGXL Methods for GXL manipulations in package graph
validateGXL,connection-method Methods for GXL manipulations in package graph
validGraph Test whether graph object is valid

-- misc --

[.dist Class "distGraph"