getKOprobes {keggorth}R Documentation

obtain probe set IDs associated with a KO term

Description

obtain probe set IDs associated with a KO term

Usage

getKOprobes(str, useAcc=TRUE, plat="hgu95av2", na.action=na.omit)

Arguments

str string giving a KEGG orthology term
useAcc logical – use all accessible terms?
plat platform corresponding to a bioconductor annotation environment, e.g., hgu95av2
na.action function for dealing with NA

Details

looks up the requested term and gives back the unique probe set ids on the platform

Value

character vector, typically processed by na.omit

Author(s)

Vince Carey <stvjc@channing.harvard.edu>

Examples

getKOtags("insulin")
es =  acc(KOgraph, "Endocrine System")
nm = names(es[[1]])
nm
esp = lapply(nm, getKOprobes)
names(esp) = nm
sapply(esp, length)

[Package keggorth version 1.2.0 Index]