getKOprobes {keggorth} | R Documentation |
obtain probe set IDs associated with a KO term
getKOprobes(str, useAcc=TRUE, plat="hgu95av2", na.action=na.omit)
str |
string giving a KEGG orthology term |
useAcc |
logical – use all accessible terms? |
plat |
platform corresponding to a bioconductor annotation environment, e.g., hgu95av2 |
na.action |
function for dealing with NA |
looks up the requested term and gives back the unique probe set ids on the platform
character vector, typically processed by na.omit
Vince Carey <stvjc@channing.harvard.edu>
getKOtags("insulin") es = acc(KOgraph, "Endocrine System") nm = names(es[[1]]) nm esp = lapply(nm, getKOprobes) names(esp) = nm sapply(esp, length)