complexEntry-class {Rintact}R Documentation

Class "complexEntry"

Description

A class representing the complex data extracted from an IntAct data file in PSI-MI 2.5 format.

Objects from the Class

Objects are usually created by psi25complex.

Slots

releaseDate:
character, release date of the data file.
interactors:
matrix. Each row represents one interactor. IntAct IDs are used as row names. Each column represents one annotation. Annotations include: UniProt ID, gene symbol, full name, locus name, ORF name, organism name, and NCBI taxonomy ID.
complexes:
list, a list of intactComplex objects, each represents one complex.

Methods

show
signature(object = "complexEntry"): a print method
complexes
signature(object = "complexEntry"): a method to generate and print all the complexes to the complexEntry class
interactors
signature(object = "complexEntry"): a method to generate and print all the interactors for a complex in the complexEntry class

Author(s)

Nianhua Li

References

The IntAct Database: http://www.ebi.ac.uk/intact/site/contents/downloads.jsf.

See Also

intactComplex-class, psi25complex


[Package Rintact version 1.2.0 Index]