separateXMLDataByExpt {Rintact} | R Documentation |
The separateXMLDataByExpt function takes in a vector of XML files and generates a list of graph objects dividing the data by separately conducted experiments. If a single XML file contains k experimental datasets, then k intactGraph objects will be produced.
separateXMLDataByExpt(intactFiles, type="direct", directed=TRUE)
intactFiles |
A vector of IntAct XML file name locations, i.e. either where they can be found on the local hard drive or an url to where they can be obtained |
type |
A character. Either "direct" or "indirect" based on the ` the information that needs to be parsed. |
directed |
A logical. User defined parameter so that the return value with either be a directed or undirected graph object. |
A list of intactGraph objects.
T Chiang
Rintact: enabling computational analysis of molecular interaction data from the IntAct repository - Tony Chiang; Nianhua Li; Sandra Orchard; Samuel Kerrien; Henning Hermjakob; Robert Gentleman; Wolfgang Huber Bioinformatics 2007; doi: 10.1093/bioinformatics/btm518.
interactionEntry-class
, complexEntry-class
,
intactXML2Graph