intactGraph-class {Rintact} | R Documentation |
Class "intactGraph"
Description
A class representing the IntAct data as a graph. It is a
superclass of the graph class.
Objects from the Class
Objects are usually created by intactXML2Graph
.
Slots
interactors
:- matrix, Each row represents one interactor. IntAct
IDs are used as row names. Each column represents one annotation.
Annotations include: UniProt ID, gene symbol, full name, locus name, ORF name,
organism name, and NCBI taxonomy ID. Only those interactors which are
the nodes of the intactGraph is given.
Methods
- show
signature(object = "intactGraph")
: a print method
- translateIntactID
signature(object = "intactGraph")
:
a method to translate IntAct codes to the various annotations.
Author(s)
T Chiang
See Also
intactXML2Graph
[Package
Rintact version 1.2.0
Index]