intactComplex-class {Rintact}R Documentation

Class "intactComplex"

Description

A class representing complex data.

Objects from the Class

Objects are usually created by psi25complex.

Slots

intactId:
character, identifier of the complex in IntAct.
shortLabel:
character, short label of the complex.
fullName:
character, full name of the complex.
organismName:
character, the unique organism names of the interactors in this complex.
taxId:
character, the unique NCBI taxonomy ID(s) of the interactors in this complex.
interactors:
data.frame. The data.frame contains two columns. The first column is the UniProt ID(s) of the interactors, the second column is the interactor's multiplicity.
attributes:
named character. The name is the attribute name, the value is the attribute value. Attribute names include: curated-complex, complex-synonym, kd, complex-properties, disease.

Methods

show
signature(object = "intactComplex"): a print method

Author(s)

Nianhua Li

See Also

psi25complex


[Package Rintact version 1.2.0 Index]