intactInteraction-class {Rintact}R Documentation

Class "intactInteraction"

Description

A class representing interaction data.

Objects from the Class

Objects are usually created by psi25interaction.

Slots

intact:
character, IntAct ID of the interaction.
interactionType:
character, the method used for detecting the interaction, such as pull down.
expPubMed:
character, PubMed ID of the publication that describes the experiment.
expIntAct:
character, IntAct ID of the experiment.
confidenceValue:
character, confidence value of the experimental interaction.
bait:
character, UniProt ID of the bait.
prey:
character, UniProt ID(s) of the prey(s).
inhibitor:
character, UniProt ID of the inhibitor, NA is missing.
neutralComponent:
character, UniProt ID of the neutral components, NA is missing.

Methods

show
signature(object = "intactInteraction"): a print method
bait
signature(object = "intactInteraction"): a method to find all the baits within the intactInteraction class and print them
prey
signature(object = "intactInteraction"): a method to find all the prey within the intactInteraction class and print them

Author(s)

Nianhua Li

See Also

psi25interaction


[Package Rintact version 1.2.0 Index]