flowQ-package |
Quality control for flow cytometry |
aggregatorList |
Class "aggregatorList" |
aggregatorList-class |
Class "aggregatorList" |
binaryAggregator |
Class "binaryAggregator" |
binaryAggregator-class |
Class "binaryAggregator" |
discreteAggregator |
Class "discreteAggregator" |
discreteAggregator-class |
Class "discreteAggregator" |
evaluateProcess |
Evaluate QA processes |
factorAggregator |
Class "factorAggregator" |
factorAggregator-class |
Class "factorAggregator" |
flowQ |
Quality control for flow cytometry |
initialize,aggregatorList-method |
Class "aggregatorList" |
initialize,qaGraph-method |
Class "qaGraph" |
initialize,qaGraphList-method |
Class "qaGraphList" |
initialize,qaProcess-method |
Abstraction of the results of a QA process |
initialize,qaProcessFrame-method |
Class "qaProcessFrame" |
locateDuplicatedParameters |
Locate Duplicated Parameters |
names,qaGraph-method |
Class "qaGraph" |
normalizeSets |
Locate Duplicated Parameters |
numericAggregator |
Class "numericAggregator" |
numericAggregator-class |
Class "numericAggregator" |
outlier-class |
Virtual Class "outlier" |
outlierResult-class |
Class "outlierResult" |
outliers |
~~ Methods for Function outliers in Package '.GlobalEnv' ~~ |
outliers,flowSet-method |
~~ Methods for Function outliers in Package '.GlobalEnv' ~~ |
outliers-methods |
~~ Methods for Function outliers in Package '.GlobalEnv' ~~ |
preProcessFlowList |
Preprocess a list of flowSets to add empty flowFrames for patients
in which certain aliquots are missing |
qaAggregator |
Abstraction of the possible outcomes of a QA process |
qaAggregator-class |
Abstraction of the possible outcomes of a QA process |
qaGraph |
Class "qaGraph" |
qaGraph-class |
Class "qaGraph" |
qaGraphList |
Class "qaGraphList" |
qaGraphList-class |
Class "qaGraphList" |
qaProcess |
Abstraction of the results of a QA process |
qaProcess-class |
Abstraction of the results of a QA process |
qaProcess.2DStatsPlot |
Creates a QA process for 2D summary statistic comparisons across
multiple samples |
qaProcess.BoundaryPlot |
Creates a QA process for comparison of the percentage of boundary
events for the specified parameters across multiple samples |
qaProcess.cellnumber |
Create QA process of type 'cellnumber' |
qaProcess.DensityPlot |
Creates a QA process for comparisons of density plots across
multiple samples |
qaProcess.ECDFPlot |
Creates a QA process for comparisons of ECDF's across multiple
samples |
qaProcess.KLDistPlot |
Creates a QA process for comparisons of KL Distances across
multiple samples |
qaProcess.marginevents |
Create QA process of type 'marginevents' |
qaProcess.timeflow |
Create QA process of type 'timeflow' |
qaProcess.timeline |
Create QA process of type 'timeline' |
qaProcessFrame |
Class "qaProcessFrame" |
qaProcessFrame-class |
Class "qaProcessFrame" |
qaProcessSummary |
Class "qaProcessSummary" |
qaProcessSummary-class |
Class "qaProcessSummary" |
qaReport |
Create HTML report using one or several QA process function(s) |
qData |
Data for demonstrating QA processes that compares dye parameters
from each patient across multiple aliquots |
rangeAggregator |
Class "rangeAggregator" |
rangeAggregator-class |
Class "rangeAggregator" |
show,aggregatorList-method |
Class "aggregatorList" |
show,binaryAggregator-method |
Class "binaryAggregator" |
show,discreteAggregator-method |
Class "discreteAggregator" |
show,factorAggregator-method |
Class "factorAggregator" |
show,numericAggregator-method |
Class "numericAggregator" |
show,qaGraph-method |
Class "qaGraph" |
show,qaGraphList-method |
Class "qaGraphList" |
show,qaProcess-method |
Abstraction of the results of a QA process |
show,qaProcessFrame-method |
Class "qaProcessFrame" |
show,qaProcessSummary-method |
Class "qaProcessSummary" |
show,rangeAggregator-method |
Class "rangeAggregator" |
show,stringAggregator-method |
Class "stringAggregator" |
stringAggregator |
Class "stringAggregator" |
stringAggregator-class |
Class "stringAggregator" |
txtFormatQAObject |
Formats results contained in QA process objects into a data frame with
appropriate row and column names |
validProcess |
Validate a QAProcess object |
writeLines,binaryAggregator,file,missing,missing-method |
Class "binaryAggregator" |
writeLines,data.frame,file,missing,missing-method |
Create HTML report for (lists of) qaProcess objects |
writeLines,discreteAggregator,file,missing,missing-method |
Class "discreteAggregator" |
writeLines,factorAggregator,file,missing,missing-method |
Class "factorAggregator" |
writeLines,numericAggregator,file,missing,missing-method |
Class "numericAggregator" |
writeLines,qaProcessSummary,file,missing,missing-method |
Class "qaProcessSummary" |
writeLines,rangeAggregator,file,missing,missing-method |
Class "rangeAggregator" |
writeLines,stringAggregator,file,missing,missing-method |
Class "stringAggregator" |
writeQAReport |
Create HTML report for (lists of) qaProcess objects |
writeQATextReport |
Create tab delimited text files for (lists of) qaProcess objects |