classicScore-class {topGO}R Documentation

Class "classicScore"

Description

TODO: A class that extends the virtual class groupStats by adding a slot representing the score of each gene. (used for KS test)

Objects from the Class

Objects can be created by calls of the form new("classicScore", testStatistic, name, allMembers, groupMembers, score, decreasing). ~~ describe objects here ~~

Slots

score:
Object of class "numeric" ~~
name:
Object of class "character" ~~
allMembers:
Object of class "character" ~~
members:
Object of class "character" ~~
testStatistic:
Object of class "function" ~~

Extends

Class "groupStats", directly.

Methods

allScore
Method to obtain the score of all members.
alternative
Returns TRUE if the score should be ordered increasing, FALSE otherwise.
membersScore
signature(object = "classicScore"): ...
rankMembers
signature(object = "classicScore"): ...
score<-
signature(object = "classicScore"): ...

Author(s)

Adrian Alexa

See Also

classicCount-class, groupStats-class, getSigGroups-methods

Examples

## define the type of test you want to use
test.stat <- new("classicScore", testStatistic = GOKSTest, name = "KS tests")


[Package topGO version 1.2.1 Index]