hgu {spikeLI}R Documentation

Selected Probe Set data

Description

This selected probe sets information contains the sequence of the selected probe sets, as well as the match and mismatch onformation and Delta G value required for the langmuir analysis

Usage

data(hgu)

Format

A data frame with 11452 observations on the following 9 variables.

Probe.Set.Name
Name of probe set
conc
a numeric vector
Ipm
a numeric vector
Imm
a numeric vector
Seq
DNA Sequence of the probe
DGpm
DG value of perfect match of the probe
DGmm
Delta G value of the mismatch of the probe
DGRNA
Delta G value of the RNA
FILE
a factor with levels HGU133 HGU95

References

E. Carlon and T. Heim, Physica A 362, 433 (2006).

See Also

Ivsc, IvsDG, collapse, SPIKE_IN, SPIKE_INA, SPIKE_INB, SPIKE_INH

Examples

data(hgu)
## maybe str(hgu) ; plot(hgu) ...

[Package spikeLI version 1.4.0 Index]