LPSeset {plgem}R Documentation

ExprSet for Testing PLGEM

Description

This exprSet contains the same microarray data used in References for PLGEM set up and validation. Briefly, it contains the result of a total of 6 hybridizations on MG-U74Av2 Affymetrix GeneChips. MAS5 scaled data represent two experimental conditions: the baseline condition (C) contains data of immature murine dendritic cells (4 replicates), the other condition (LPS) contains data of the same cells stimulated 4 hours with LPS (2 replicates). This dataset is part of the data used in references.

Usage

data(LPSeset)

Format

expression Set

References

N. Pavelka et al., BMC Bioinformatics, 2004 Dec 17;5(1):203; http://www.genopolis.it

Examples

data(LPSeset)
LPSfit<-plgem.fit(data = LPSeset, fittingEval = TRUE)

[Package plgem version 1.8.0 Index]