detectionCall {lumi} | R Documentation |
detectionCall(x.lumi, Th = 0.01)
x.lumi |
a LumiBatch object |
Th |
the threshold. By default, when the detection p-value is less than 0.01, we suppose it is detectable. For the old version of BeadStudio output (version 2 or earlier), the threshold will automatically transferred as 1 - Th, because in the old format, value close to 1 is suppose to be detectable. |
Return the detectable probe ratio of each sample
Pan Du
## load example data data(example.lumi) ## load example data data(example.lumi) ## estimate the detect call (percentage of expressed genes) temp <- detectionCall(example.lumi) print(temp)