detectionCall {lumi}R Documentation

Estimate the detectable probe ratio in each sample

Description

Usage

detectionCall(x.lumi, Th = 0.01)

Arguments

x.lumi a LumiBatch object
Th the threshold. By default, when the detection p-value is less than 0.01, we suppose it is detectable. For the old version of BeadStudio output (version 2 or earlier), the threshold will automatically transferred as 1 - Th, because in the old format, value close to 1 is suppose to be detectable.

Value

Return the detectable probe ratio of each sample

Author(s)

Pan Du

References

See Also

lumiQ

Examples

## load example data
data(example.lumi)
## load example data
data(example.lumi)

## estimate the detect call (percentage of expressed genes)
temp <- detectionCall(example.lumi)
print(temp)


[Package lumi version 1.2.0 Index]