genefilter: methods for filtering genes from microarray experiments


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Documentation for package `genefilter' version 1.14.1

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allNA A filter function to determine if all elements of a vector are NA.
Anova A filter function for Analysis of Variance
anyNA A filter function to determine if all elements of a vector are NA.
area Class "rowROC"
area,rowROC-method Class "rowROC"
AUC Class "rowROC"
AUC,rowROC-method Class "rowROC"
colFtests t-tests and F-tests for rows or columns of a matrix
colttests t-tests and F-tests for rows or columns of a matrix
coxfilter A filter function for univariate Cox regression.
cv A filter function for the coefficient of variation.
eSetFilter A function to filter an eSet object
fastT t-tests and F-tests for rows or columns of a matrix
filterfun Creates a first FALSE exiting function from the list of filter functions it is given.
findLargest Find the Entrez Gene ID corresponding to the largest statistic
gapFilter A filter to select genes based on there being a gap.
genefilter A function to filter genes.
genefinder Finds genes that have similar patterns of expression.
genefinder,ExpressionSet,vector-method Finds genes that have similar patterns of expression.
genefinder,exprSet,vector-method Finds genes that have similar patterns of expression.
genefinder,matrix,vector-method Finds genes that have similar patterns of expression.
genescale Scales a matrix or vector.
getFilterNames A function to filter an eSet object
getFuncDesc A function to filter an eSet object
getRdAsText A function to filter an eSet object
half.range.mode Mode estimation for continuous data
isESet A function to filter an eSet object
kOverA A filter function for k elements larger than A.
maxA A filter function to filter according to the maximum.
nsFilter Non-Specific-ly Filter an ExpressionSet
nsFilter,ExpressionSet-method Non-Specific-ly Filter an ExpressionSet
parseArgs A function to filter an eSet object
parseDesc A function to filter an eSet object
pAUC Class "rowROC"
pAUC,rowROC,numeric-method Class "rowROC"
plot,rowROC,missing-method Class "rowROC"
pOverA A filter function to filter according to the proportion of elements larger than A.
rowFtests t-tests and F-tests for rows or columns of a matrix
rowFtests,ExpressionSet,character-method t-tests and F-tests for rows or columns of a matrix
rowFtests,ExpressionSet,factor-method t-tests and F-tests for rows or columns of a matrix
rowFtests,exprSet,character-method t-tests and F-tests for rows or columns of a matrix
rowFtests,exprSet,factor-method t-tests and F-tests for rows or columns of a matrix
rowFtests,matrix,factor-method t-tests and F-tests for rows or columns of a matrix
rowpAUCs Rowwise ROC and pAUC computation
rowpAUCs,ExpressionSet,ANY-method Rowwise ROC and pAUC computation
rowpAUCs,ExpressionSet,character-method Rowwise ROC and pAUC computation
rowpAUCs,exprSet,ANY-method Rowwise ROC and pAUC computation
rowpAUCs,exprSet,character-method Rowwise ROC and pAUC computation
rowpAUCs,matrix,factor-method Rowwise ROC and pAUC computation
rowpAUCs,matrix,numeric-method Rowwise ROC and pAUC computation
rowpAUCs-methods Rowwise ROC and pAUC computation
rowROC-class Class "rowROC"
rowSds Row standard deviation of a numeric array
rowttests t-tests and F-tests for rows or columns of a matrix
rowttests,ExpressionSet,character-method t-tests and F-tests for rows or columns of a matrix
rowttests,ExpressionSet,factor-method t-tests and F-tests for rows or columns of a matrix
rowttests,ExpressionSet,missing-method t-tests and F-tests for rows or columns of a matrix
rowttests,exprSet,character-method t-tests and F-tests for rows or columns of a matrix
rowttests,exprSet,factor-method t-tests and F-tests for rows or columns of a matrix
rowttests,exprSet,missing-method t-tests and F-tests for rows or columns of a matrix
rowttests,matrix,factor-method t-tests and F-tests for rows or columns of a matrix
rowttests,matrix,missing-method t-tests and F-tests for rows or columns of a matrix
sens Class "rowROC"
sens,rowROC-method Class "rowROC"
setESetArgs A function to filter an eSet object
shorth A location estimator based on the shorth
show,rowROC-method Class "rowROC"
showESet A function to filter an eSet object
spec Class "rowROC"
spec,rowROC-method Class "rowROC"
tdata A small test dataset of Affymetrix Expression data.
ttest A filter function for a t.test
[,rowROC-method Class "rowROC"