make.swap {genArise} | R Documentation |
Swap analysis
Description
Read both files, but only extract the interested columns and create a Spot object.
Usage
make.swap(spot1, spot2, Cy3, Cy5, BgCy3, BgCy5, Id, Symdesc, header = FALSE, is.ifc = FALSE,envir,nr,nc)
Arguments
spot1 |
a connection or a character string giving the
name of the file to read where each column represent the spot
components. |
spot2 |
a connection or a character string giving the
name of the file to read where each column represent the spot
components. |
Cy3 |
column that represent Cy3. |
Cy5 |
column that represent Cy5. |
BgCy3 |
column that represent BgCy3. |
BgCy5 |
column that represent BgCy5. |
Id |
column that represent Id. |
Symdesc |
optional identifier besides the Id column. |
header |
the logical value of the header input file |
is.ifc |
If is.ifc = TRUE this experiment was done in the
Unit of Microarray from Cellular Phisiology Institute. |
envir |
Environment where are the genArise variables. |
nr |
Total of meta-row. |
nc |
Total of meta-column. |
See Also
write.spot
.
[Package
genArise version 1.12.0
Index]