!,filter-method |
Filter FCS files |
$,flowSet,character-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
$.flowFrame |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
%&% |
Take the intersection of two filters with subset semantics |
%&%,ANY-method |
Take the intersection of two filters with subset semantics |
%&%-methods |
Take the intersection of two filters with subset semantics |
%in% |
Methods for Function %in% in Package `flowCore' |
%in%,ANY,filterResult-method |
Methods for Function %in% in Package `flowCore' |
%in%,ANY,multipleFilterResult-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,complementFilter-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,ellipsoidGate-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,filterResult-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,intersectFilter-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,kmeansFilter-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,norm2Filter-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,polygonGate-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,rectangleGate-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,sampleFilter-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,subsetFilter-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,transformFilter-method |
Methods for Function %in% in Package `flowCore' |
%in%,flowFrame,unionFilter-method |
Methods for Function %in% in Package `flowCore' |
%in%-methods |
Methods for Function %in% in Package `flowCore' |
%on% |
Methods for Function %on% in Package `flowCore' |
%on%,filter,transformList-method |
Methods for Function %on% in Package `flowCore' |
%on%,transformList,flowFrame-method |
Methods for Function %on% in Package `flowCore' |
%on%,transformList,flowSet-method |
Methods for Function %on% in Package `flowCore' |
%on%-methods |
Methods for Function %on% in Package `flowCore' |
%subset% |
Take the intersection of two filters with subset semantics |
%subset%,ANY-method |
Take the intersection of two filters with subset semantics |
%subset%,filter,filter-method |
Filter FCS files |
&,filter,filter-method |
Filter FCS files |
==,filterResult,flowFrame-method |
Class "filterResult" |
==,flowFrame,filterResult-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
coerce |
Force an Object to Belong to a Class |
coerce,complementFilter,logical-method |
Force an Object to Belong to a Class |
coerce,environment,flowSet-method |
Force an Object to Belong to a Class |
coerce,factor,filterResult-method |
Force an Object to Belong to a Class |
coerce,filter,logical-method |
Force an Object to Belong to a Class |
coerce,filterResult,logical-method |
Force an Object to Belong to a Class |
coerce,intersectFilter,logical-method |
Force an Object to Belong to a Class |
coerce,list,flowSet-method |
Force an Object to Belong to a Class |
coerce,logical,filterResult-method |
Force an Object to Belong to a Class |
coerce,logicalFilterResult,logical-method |
Force an Object to Belong to a Class |
coerce,numeric,filterResult-method |
Force an Object to Belong to a Class |
coerce,randomFilterResult,logical-method |
Force an Object to Belong to a Class |
coerce,subsetFilter,logical-method |
Force an Object to Belong to a Class |
coerce,unionFilter,logical-method |
Force an Object to Belong to a Class |
colnames,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
colnames,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
colnames,transformList-method |
Class "transformList" |
colnames<-,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
colnames<-,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
compensate |
Compensate for spillover between channels in a flowSet or a flowFrame |
compensate,flowFrame,matrix-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
compensate,flowFrame-method |
Compensate for spillover between channels in a flowSet or a flowFrame |
compensate,flowSet,matrix-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
compensate,flowSet-method |
Compensate for spillover between channels in a flowSet or a flowFrame |
compensate,matrix-method |
Compensate for spillover between channels in a flowSet or a flowFrame |
featureNames,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
filter |
Filter FCS files |
filter,filter-method |
A class for representing filtering operations to be applied to flow data. |
filter,flowFrame |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
filter,flowFrame,filter-method |
Filter FCS files |
filter,flowFrame,norm2Filter |
Filter FCS files |
filter,flowFrame,polygonGate |
Filter FCS files |
filter,flowFrame,rectangleGate |
Filter FCS files |
filter,flowSet,filter-method |
Filter FCS files |
filter,flowSet,list-method |
Filter FCS files |
filter-class |
A class for representing filtering operations to be applied to flow data. |
filterDetails |
Obtain details about a filter operation |
filterDetails,filterResult,ANY-method |
Obtain details about a filter operation |
filterDetails,filterResult,missing-method |
Obtain details about a filter operation |
filterDetails-methods |
Obtain details about a filter operation |
filterDetails<-,filterResult,character,ANY-method |
Obtain details about a filter operation |
filterDetails<-,filterResult,character,filter-method |
Obtain details about a filter operation |
filterDetails<-,filterResult,character,setOperationFilter-method |
Obtain details about a filter operation |
filtergate,filter-class |
A class for representing filtering operations to be applied to flow data. |
filterResult-class |
Class "filterResult" |
flowFrame |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
flowFrame-class |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
flowSet |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
flowSet-class |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
fsApply |
Apply a Function over values in a flowSet |
fsApply,flowSet,ANY |
Apply a Function over values in a flowSet |
fsApply,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
keyword |
Methods to retrieve keywords of a flowFrame |
keyword,flowFrame,character-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
keyword,flowFrame,function-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
keyword,flowFrame,list-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
keyword,flowFrame,missing-method |
Methods to retrieve keywords of a flowFrame |
keyword,flowSet,list-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
keyword-methods |
Methods to retrieve keywords of a flowFrame |
kmeansFilter |
One dimensional k-means filters |
kmeansFilter-class |
One dimensional k-means filters |
parameters |
Methods to retrieve FCS parameters from a flowFrame |
parameters,filter-method |
Methods to retrieve FCS parameters from a flowFrame |
parameters,flowFrame,missing-method |
Methods to retrieve FCS parameters from a flowFrame |
parameters,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
pData,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
phenoData,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
phenoData<-,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
phenoData<-,flowSet,phenoData-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
plot,flowFrame,character-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
plot,flowFrame,filter-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
plot,flowFrame,missing-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
polygonGate |
Define filter boundaries |
polygonGate,filter-class |
A class for representing filtering operations to be applied to flow data. |
polygonGate-class |
Define filter boundaries |
polytopeGate |
Define filter boundaries |
polytopeGate-class |
Define filter boundaries |
print.filterSummary |
Summarize the results after applying a filter |
sampleFilter-class |
Class "sampleFilter" |
sampleNames,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
scaleTransform |
Create the definition of a scale transformation function to be applied on a data set |
setOperationFilter-class |
Class "setOperationFilter" |
show,filter-method |
Filter FCS files |
show,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
show,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
show,kmeansFilter-method |
One dimensional k-means filters |
show,polygonGate-method |
Define filter boundaries |
show,rectangleGate-method |
Define filter boundaries |
show,sampleFilter-method |
Class "sampleFilter" |
spillover |
Compute a spillover matrix from a flowSet |
spillover,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
spillover,flowSet-method |
Compute a spillover matrix from a flowSet |
split,flowFrame,filter-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
split,flowFrame,logicalFilterResult-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
split,flowFrame,multipleFilterResult-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
split,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
split,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
Subset |
Subset a flowFrame or a flowSet |
Subset,flowFrame,ANY-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
Subset,flowFrame,filter-metho |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
Subset,flowFrame,filter-method |
Subset a flowFrame or a flowSet |
Subset,flowFrame,logical-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
Subset,flowSet,ANY |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
Subset,flowSet,ANY-method |
Subset a flowFrame or a flowSet |
Subset,flowSet,list-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
summary |
Summarize the results after applying a filter |
summary,filter-method |
Filter FCS files |
summary,flowFrame-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
summary,multipleFilterResult-method |
Class "multipleFilterResult" |
summary,rectangleGate-method |
Define filter boundaries |
summary,subsetFilter-method |
Summarize the results after applying a filter |
summary,transform-method |
'transform': a class for transforming flow-cytometry data by applying scale factors. |
summary-methods |
Summarize the results after applying a filter |
[,flowFrame,ANY-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
[,flowFrame,filter-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
[,flowFrame,filterResult-method |
'flowFrame': a class for storing observed quantitative properties for a population of cells from a FACS run |
[,flowSet,ANY-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
[,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
[[,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
[[,multipleFilterResult-method |
Class "multipleFilterResult" |
[[<-,flowSet-method |
'flowSet': a class for storing flow cytometry raw data from quantitative cell-based assays |
|,filter,filter-method |
Filter FCS files |