slideQuality {arrayQuality} | R Documentation |
This component uses data extracted from GenePix file to provide quality control statistics.
slideQuality(gprData = NULL, controlMatrix = controlCode, controlId = c("ID", "Name"), DEBUG = FALSE,...)
gprData |
A list of vector, results from readGPR ,
containing information extracted from the gpr file. |
controlMatrix |
A matrix defining control status information. |
controlId |
Character string. Name of the column of the gpr file used to define controls. |
DEBUG |
If 'TRUE', debug statements are printed. |
... |
additional arguments |
A matrix of numbers.
Agnes Paquet
gpQuality
, globalQuality
,
readGPR
datadir <- system.file("gprQCData", package="arrayQuality") if (interactive()) { gprdata <- readGPR(fnames="9Mm137.gpr", path=datadir) results <- slideQuality(gprdata) }