probes2table {affycoretools} | R Documentation |
A function to convert a vector of Affy ids to an annotated HTML table.
probes2table(eset, probids, lib, otherdata = NULL, anncols = aaf.handler()[c(1:3, 7:8, 10:13)], html = TRUE, text = FALSE, express = TRUE, save = FALSE, filename)
eset |
An ExpressionSet containing Affy expression
values. |
probids |
A vector of probe ids. |
lib |
An annotation package for the Affy chips used. |
otherdata |
A *named* list of additional information to include in the resulting table. Examples would be t-statistics, p-values, fold change, etc. Each list item should be a vector the same length as the probids vector. The name associated with each list item will be used as the column name in the resulting table. |
anncols |
A vector of things to annotate, produced by a call to aaf.handler(). |
html |
Output data in HTML tables? Defaults to TRUE . |
text |
Output data in text tables? Defaults to TRUE . |
express |
Output expression values in table?
Defaults to TRUE . |
save |
Should tables be saved as R objects for
further processing? Defaults to FALSE . |
filename |
Filename of the resulting HTML table. |
If save
is TRUE
, a data.frame
is saved containing
the data.
James W. MacDonald <jmacdon@med.umich.edu>