createMipsDataFrame {ScISI} | R Documentation |
This function takes two parameters: (1) a named vector that has a
description of the MIPS protein complexes (this vector is one of the
two outputs from getMipsInfo
referenced by DESC);
(2) the matrix representation of the bipartite graph. The output of
the function is a dataframe with three columns: the names of the
complexes in the matrix; the ID of the corresponding complex;
the description of the corresponding complex.
createMipsDataFrame(desc, mips)
desc |
A named character vector (where the name is the MIPS ID for
each protein complex obtained by getMipsInfo ) whose
entries describe the corrsponding protein complex. |
mips |
The matrix representation of the protein complex membership graph for the MIPS protein complexes |
The return value is a data frame with three coluumns: the names column records the names of the protein complexes as indexed in the incidence matrix; the ID column records the MIPS ID that corresponds to each protein complex; the Desc column describes each of the protein complexes.
Tony Chiang
mips.gsf.de
mips = getMipsInfo(wantSubComplexes=FALSE) mipsM = createMipsMatrix(mips) mipsDF = createMipsDF(mips$DESC, mipsM)